Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0561G169 Amborella trichopoda HOM05D002794 ORTHO05D003763 1.0e-54 216.5 105 100.0
ATR1127G237 Amborella trichopoda HOM05D002794 ORTHO05D003763 5.9e-31 137.5 72 88.9
AUR62014781 Chenopodium quinoa HOM05D002794 ORTHO05D003763 5.9e-31 137.5 78 82.1
vmacro03843 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 1.0e-30 136.7 70 88.6
ATR0006G055 Amborella trichopoda HOM05D002794 ORTHO05D003763 1.3e-30 136.3 69 89.9
Haze_06521 Corylus avellana HOM05D002794 ORTHO05D003763 2.2e-30 135.6 70 87.1
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 2.9e-30 135.2 69 88.4
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 2.9e-30 135.2 69 88.4
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 2.9e-30 135.2 69 88.4
vmacro15890 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 2.9e-30 135.2 69 88.4
PSO541G2705 Papaver somniferum HOM05D002794 ORTHO05D003763 5.0e-30 134.4 69 88.4
PSO675G3577 Papaver somniferum HOM05D002794 ORTHO05D003763 5.0e-30 134.4 69 88.4
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 6.5e-30 134.0 69 87.0
Dinv07528 Davidia involucrata HOM05D002794 ORTHO05D003763 6.5e-30 134.0 69 87.0
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 6.5e-30 134.0 69 88.4
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 6.5e-30 134.0 69 88.4
Nn1g04005 Nelumbo nucifera HOM05D002794 ORTHO05D003763 8.5e-30 133.7 68 88.2
Atru.chr10.1951 Acer truncatum HOM05D002794 ORTHO05D003763 1.1e-29 133.3 69 87.0
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 1.1e-29 133.3 69 87.0
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 1.1e-29 133.3 69 87.0
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 1.1e-29 133.3 69 88.4
COL.COLO4_31514 Corchorus olitorius HOM05D002794 ORTHO05D003763 1.1e-29 133.3 78 79.5
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 1.1e-29 133.3 69 87.0
Phvul.006G188200 Phaseolus vulgaris HOM05D002794 ORTHO05D003763 1.1e-29 133.3 69 87.0
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 1.1e-29 133.3 69 87.0
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 1.1e-29 133.3 69 87.0
Ah.14g089250 Amaranthus hybridus HOM05D002794 ORTHO05D003763 1.5e-29 132.9 69 87.0
AUR62016968 Chenopodium quinoa HOM05D002794 ORTHO05D003763 1.5e-29 132.9 69 87.0
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 1.5e-29 132.9 69 87.0
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 1.5e-29 132.9 69 87.0
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 1.9e-29 132.5 69 87.0
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 1.9e-29 132.5 69 87.0
EL10Ac8g20333 Beta vulgaris HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 87.0
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 87.0
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 87.0
Ca_25735_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 85.5
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 85.5
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 87.0
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 87.0
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 87.0
MD05G1318200 Malus domestica HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 85.5
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 85.5
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 2.5e-29 132.1 69 85.5
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 3.2e-29 131.7 69 87.0
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 3.2e-29 131.7 69 87.0
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 3.2e-29 131.7 69 87.0
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 3.2e-29 131.7 69 87.0
MBI18_g17022_MAGBIO Magnolia biondii HOM05D002794 ORTHO05D003763 3.2e-29 131.7 69 85.5
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 3.2e-29 131.7 69 87.0
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 3.2e-29 131.7 69 87.0
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 3.2e-29 131.7 69 85.5
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 4.2e-29 131.3 69 87.0
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 4.2e-29 131.3 69 87.0
RhsimUnG0043800 Rhododendron simsii HOM05D002794 ORTHO05D003763 4.2e-29 131.3 69 87.0
Ah.09g235770 Amaranthus hybridus HOM05D002794 ORTHO05D003763 5.5e-29 131.0 69 87.0
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 5.5e-29 131.0 69 85.5
Psat6g214160 Pisum sativum HOM05D002794 ORTHO05D003763 5.5e-29 131.0 69 84.1
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 5.5e-29 131.0 69 87.0
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 5.5e-29 131.0 69 87.0
TAR626G0204 Trochodendron aralioides HOM05D002794 ORTHO05D003763 5.5e-29 131.0 69 85.5
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 7.2e-29 130.6 69 85.5
Mapoly0051s0020 Marchantia polymorpha HOM05D002794 ORTHO05D003763 7.2e-29 130.6 69 87.0
Eucgr.D00651 Eucalyptus grandis HOM05D002794 ORTHO05D003763 9.4e-29 130.2 69 85.5
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 9.4e-29 130.2 69 84.1
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 9.4e-29 130.2 69 85.5
Aqoxy3G03900 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 1.2e-28 129.8 69 85.5
Aqoxy5G00583 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 1.2e-28 129.8 69 85.5
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 1.2e-28 129.8 69 84.1
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 1.2e-28 129.8 69 85.5
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 1.2e-28 129.8 69 85.5
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 1.2e-28 129.8 69 85.5
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 1.2e-28 129.8 69 85.5
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 1.2e-28 129.8 69 85.5
HPP92_014808 Vanilla planifolia HOM05D002794 ORTHO05D003763 1.2e-28 129.8 69 85.5
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.6e-28 129.4 69 85.5
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.6e-28 129.4 69 85.5
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 84.1
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 85.5
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 84.1
Dinv40533 Davidia involucrata HOM05D002794 ORTHO05D001608 2.1e-28 129.0 69 82.6
FvH4_3g04740 Fragaria vesca HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 84.1
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 84.1
FAN16G3580 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 84.1
FAN25G2654 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 84.1
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 85.5
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 84.1
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 2.1e-28 129.0 69 84.1
FAN21G3653 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.7e-28 128.6 69 84.1
Medtr4g089085 Medicago truncatula HOM05D002794 ORTHO05D003763 2.7e-28 128.6 69 84.1
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 2.7e-28 128.6 69 84.1
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 3.6e-28 128.3 69 85.5
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 3.6e-28 128.3 69 85.5
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 4.7e-28 127.9 69 85.5
Sabra11G0033000 Salix brachista HOM05D002794 ORTHO05D003763 6.1e-28 127.5 69 84.1
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 6.1e-28 127.5 69 84.1
SEGI_11918 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 6.1e-28 127.5 69 84.1
GSVIVG01002655001 Vitis vinifera HOM05D002794 ORTHO05D003763 8.0e-28 127.1 65 87.7
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 1.0e-27 126.7 69 85.5
Medtr2g013350 Medicago truncatula HOM05D002794 ORTHO05D003763 1.4e-27 126.3 69 84.1
Pp3c14_10510 Physcomitrium patens HOM05D002794 ORTHO05D003763 1.4e-27 126.3 69 84.1
Pp3c17_13490 Physcomitrium patens HOM05D002794 ORTHO05D003763 1.4e-27 126.3 69 84.1
Sc05g0007870 Simmondsia chinensis HOM05D002794 ORTHO05D003763 1.4e-27 126.3 69 84.1
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 2.3e-27 125.6 69 84.1
CARHR228380 Cardamine hirsuta HOM05D002794 ORTHO05D003763 2.3e-27 125.6 68 85.3
Nitab4.5_0003063g0060 Nicotiana tabacum HOM05D002794 ORTHO05D003763 2.3e-27 125.6 69 82.6
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 3.0e-27 125.2 67 85.1
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 3.0e-27 125.2 69 82.6
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 4.0e-27 124.8 69 82.6
TAR624G1447 Trochodendron aralioides HOM05D002794 ORTHO05D003763 4.0e-27 124.8 69 82.6
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 5.2e-27 124.4 69 82.6
Nitab4.5_0003668g0030 Nicotiana tabacum HOM05D002794 ORTHO05D003763 5.2e-27 124.4 69 81.2
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 6.7e-27 124.0 68 85.3
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 6.7e-27 124.0 69 82.6
Os02g0827300 Oryza sativa ssp. japonica HOM05D002794 ORTHO05D003763 1.1e-26 123.2 69 81.2
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 1.5e-26 122.9 68 83.8
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 1.5e-26 122.9 69 82.6
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 1.5e-26 122.9 69 82.6
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 1.5e-26 122.9 69 82.6
Lj1g0004029 Lotus japonicus HOM05D002794 ORTHO05D003763 2.0e-26 122.5 69 81.2
AagrBONN_evm.TU.Sc2ySwM_344.3345 Anthoceros agrestis HOM05D002794 ORTHO05D003763 2.6e-26 122.1 69 79.7
Zm00001eb229010 Zea mays HOM05D002794 ORTHO05D003763 2.6e-26 122.1 69 79.7
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 3.3e-26 121.7 68 82.4
Hund21250 Selenicereus undatus HOM05D002794 ORTHO05D003763 3.3e-26 121.7 70 81.4
Zm00001eb271720 Zea mays HOM05D002794 ORTHO05D003763 3.3e-26 121.7 69 79.7
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 4.4e-26 121.3 69 79.7
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 4.4e-26 121.3 69 81.2
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 4.4e-26 121.3 69 81.2
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 5.7e-26 120.9 69 81.2
Lj4g0023033 Lotus japonicus HOM05D002794 ORTHO05D003763 7.5e-26 120.6 67 82.1
RcHm_v2.0_Chr2g0163041 Rosa chinensis HOM05D002794 ORTHO05D003763 7.5e-26 120.6 70 81.4
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 7.5e-26 120.6 69 81.2
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 7.5e-26 120.6 69 81.2
BcaB03g11685 Brassica carinata HOM05D002794 ORTHO05D003763 1.3e-25 119.8 68 82.4
BcaC01g00687 Brassica carinata HOM05D002794 ORTHO05D003763 1.3e-25 119.8 68 82.4
A08p15050 Brassica napus HOM05D002794 ORTHO05D003763 1.3e-25 119.8 68 82.4
C03p83140 Brassica napus HOM05D002794 ORTHO05D003763 1.3e-25 119.8 68 82.4
BolC3t20597H Brassica oleracea HOM05D002794 ORTHO05D003763 1.3e-25 119.8 68 82.4
BraA08t33486Z Brassica rapa HOM05D002794 ORTHO05D003763 1.3e-25 119.8 68 82.4
Migut.H01505 Erythranthe guttata HOM05D002794 ORTHO05D003763 1.7e-25 119.4 69 81.2
Oeu050833.1 Olea europaea HOM05D002794 ORTHO05D003763 2.2e-25 119.0 69 79.7
Rhsim08G0091600 Rhododendron simsii HOM05D002794 ORTHO05D003763 2.2e-25 119.0 70 80.0
MCO05G100 Micromonas commoda HOM05D002794 ORTHO05D003763 3.7e-25 118.2 68 76.5
Peaxi162Scf01163g00119 Petunia axillaris HOM05D002794 ORTHO05D003763 4.8e-25 117.9 69 79.7
vmacro23256 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 6.3e-25 117.5 70 80.0
Oeu016115.2 Olea europaea HOM05D002794 ORTHO05D003763 1.1e-24 116.7 69 78.3
SalBow3G1823 Salvia bowleyana HOM05D002794 ORTHO05D003763 1.4e-24 116.3 69 78.3
SalBow5G3052 Salvia bowleyana HOM05D002794 ORTHO05D003763 1.4e-24 116.3 69 78.3
vmacro04586 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 1.4e-24 116.3 70 78.6
Aqoxy7G01746 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 2.4e-24 115.5 71 80.3
FAN14G4862 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.4e-24 115.5 70 80.0
CBR_g29963 Chara braunii HOM05D002794 ORTHO05D003763 5.3e-24 114.4 69 78.3
DCAR_004112 Daucus carota HOM05D002794 ORTHO05D003763 5.3e-24 114.4 80 70.0
FAN02G3067 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.0e-23 112.5 70 78.6
Rhsim07G0122000 Rhododendron simsii HOM05D002794 ORTHO05D003763 2.0e-23 112.5 71 76.1
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 2.7e-23 112.1 68 80.9
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 2.7e-23 112.1 68 80.9
Cre12.g514450 Chlamydomonas reinhardtii HOM05D002794 ORTHO05D003763 3.5e-23 111.7 66 74.2
Lsat_1_v5_gn_7_71460 Lactuca sativa HOM05D002794 ORTHO05D000981 3.5e-23 111.7 61 83.6
SMO146G0248 Selaginella moellendorffii HOM05D002794 ORTHO05D003763 5.9e-23 110.9 69 71.0
FvH4_6g45300 Fragaria vesca HOM05D002794 ORTHO05D003763 7.7e-23 110.5 70 78.6
Peaxi162Scf00535g00054 Petunia axillaris HOM05D002794 ORTHO05D003763 2.2e-22 109.0 69 73.9
Peaxi162Scf00535g00058 Petunia axillaris HOM05D002794 ORTHO05D003763 2.2e-22 109.0 69 73.9
Peaxi162Scf22083g00001 Petunia axillaris HOM05D002794 ORTHO05D003763 2.2e-22 109.0 69 73.9
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 2.9e-22 108.6 68 79.4
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 2.9e-22 108.6 68 79.4
COL.COLO4_31110 Corchorus olitorius HOM05D002794 ORTHO05D003763 1.5e-21 106.3 67 77.6
Haze_27100 Corylus avellana HOM05D002794 ORTHO05D003763 9.4e-21 103.6 73 67.1
PRCOL_00004721 Prasinoderma coloniale HOM05D002794 ORTHO05D003763 2.1e-20 102.4 68 69.1
AL6G48540 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 2.0e-18 95.9 68 70.6
Cfa004795 Carpinus fangiana HOM05D002794 ORTHO05D003763 2.8e-17 92.0 49 85.7
Nitab4.5_0000960g0150 Nicotiana tabacum HOM05D002794 ORTHO05D003763 2.8e-17 92.0 69 69.6
RhsimUnG0043300 Rhododendron simsii HOM05D002794 ORTHO05D008438 1.4e-16 89.7 55 80.0
RcHm_v2.0_Chr5g0007041 Rosa chinensis HOM05D002794 ORTHO05D003763 4.5e-15 84.7 65 66.2
RcHm_v2.0_Chr5g0007191 Rosa chinensis HOM05D002794 ORTHO05D003763 4.5e-15 84.7 65 66.2
Carub.0007s2870 Capsella rubella HOM05D002794 ORTHO05D003763 1.0e-14 83.6 43 86.0
Lalb_Chr16g0383551 Lupinus albus HOM05D002794 ORTHO05D003763 1.3e-14 83.2 45 80.0
Atru.chr4.2241 Acer truncatum HOM05D002794 ORTHO05D003763 2.9e-14 82.0 48 75.0
Nitab4.5_0007957g0040 Nicotiana tabacum HOM05D002794 ORTHO05D003763 2.5e-13 79.0 59 69.5
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 1.6e-12 76.3 68 61.8
FAN16G2490 Fragaria x ananassa HOM05D002794 ORTHO05D003763 3.6e-12 75.1 69 56.5
Ciclev10006607m.g Citrus clementina HOM05D002794 ORTHO05D003763 2.0e-10 69.3 78 51.3
CDE08G0844 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.8e-08 62.8 36 77.8
COL.COLO4_14439 Corchorus olitorius HOM05D002794 ORTHO05D003763 2.7e-07 58.9 54 57.4
COL.COLO4_21035 Corchorus olitorius HOM05D002794 ORTHO05D003763 4.5e-07 58.2 45 64.4
COL.COLO4_09676 Corchorus olitorius HOM05D002794 ORTHO05D044696 8.6e-06 53.9 49 53.1


User provided reference genes

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