Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 2.1e-177 625.5 307 100.0
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 6.4e-102 374.8 319 60.5
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.9e-101 373.2 319 58.3
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 2.1e-97 359.8 305 60.3
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.8e-96 356.7 317 57.1
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 9.0e-96 354.4 321 57.3
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 1.2e-95 354.0 322 57.5
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.5e-95 353.6 320 57.5
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.5e-95 353.6 318 56.0
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.5e-95 353.6 305 57.0
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.0e-95 353.2 320 55.9
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.6e-95 352.8 320 55.6
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 1.3e-94 350.5 319 57.1
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 3.8e-94 349.0 322 55.9
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 4.9e-94 348.6 315 57.1
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 4.9e-94 348.6 330 55.2
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 8.4e-94 347.8 314 58.9
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.1e-93 347.4 318 55.0
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 4.2e-93 345.5 318 57.9
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 5.4e-93 345.1 317 55.2
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 7.1e-93 344.7 319 55.8
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 9.3e-93 344.4 320 57.2
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.6e-92 343.6 316 57.3
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 4.6e-92 342.0 317 55.5
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 4.6e-92 342.0 316 56.3
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 6.0e-92 341.7 311 56.3
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 7.9e-92 341.3 311 57.9
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 7.9e-92 341.3 317 57.4
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 6.6e-91 338.2 271 60.9
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 6.6e-91 338.2 311 55.0
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 8.7e-91 337.8 312 57.7
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.5e-90 337.0 306 55.9
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 2.5e-90 336.3 310 56.5
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 3.3e-90 335.9 309 57.6
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 3.3e-90 335.9 311 57.6
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 4.3e-90 335.5 318 55.0
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 4.3e-90 335.5 318 55.0
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.3e-90 335.5 312 57.4
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 5.6e-90 335.1 318 56.0
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 7.4e-90 334.7 318 56.6
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 9.6e-90 334.3 301 58.1
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.3e-89 334.0 314 54.5
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.3e-89 334.0 254 61.8
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.3e-89 334.0 311 56.6
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 1.6e-89 333.6 304 55.3
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.1e-89 333.2 317 54.9
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 2.8e-89 332.8 262 61.1
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 3.6e-89 332.4 319 54.5
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 6.2e-89 331.6 319 54.5
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 6.2e-89 331.6 319 54.5
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.1e-88 330.9 315 53.7
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.4e-88 330.5 327 54.4
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.4e-88 330.5 319 53.0
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.4e-88 330.5 305 55.1
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.4e-88 330.5 319 54.2
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.4e-88 330.5 286 60.1
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.4e-88 329.7 312 56.7
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 2.4e-88 329.7 317 54.3
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 3.1e-88 329.3 327 54.1
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 3.1e-88 329.3 310 55.2
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 5.3e-88 328.6 314 54.5
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 5.3e-88 328.6 240 65.0
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 9.0e-88 327.8 316 53.8
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 4.5e-87 325.5 334 52.1
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 4.5e-87 325.5 257 60.7
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 5.8e-87 325.1 258 60.9
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 5.8e-87 325.1 257 60.7
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 7.6e-87 324.7 321 53.3
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 9.9e-87 324.3 309 54.4
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.2e-86 323.2 318 52.2
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 2.9e-86 322.8 327 54.1
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 3.8e-86 322.4 320 53.1
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 8.4e-86 321.2 262 61.1
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 8.4e-86 321.2 313 53.7
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 2.4e-85 319.7 258 60.9
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 2.4e-85 319.7 325 52.9
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 3.2e-85 319.3 312 52.9
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 5.5e-85 318.5 318 52.5
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 5.5e-85 318.5 317 51.4
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 7.1e-85 318.2 260 60.8
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.2e-84 317.4 312 54.5
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.2e-84 317.4 377 47.5
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.6e-84 317.0 305 52.1
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.7e-84 316.2 316 53.2
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 3.5e-84 315.8 320 51.6
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 7.9e-84 314.7 357 48.5
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 6.7e-83 311.6 259 57.9
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.3e-81 307.4 282 54.6
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.6e-81 307.0 256 58.2
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.8e-81 305.4 275 55.3
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.8e-81 305.4 275 55.3
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 8.1e-81 304.7 309 52.8
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.1e-80 304.3 254 57.9
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.4e-80 303.9 341 48.7
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.4e-80 303.9 256 57.4
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 1.5e-79 300.4 275 54.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 2.0e-79 300.1 373 46.1
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 3.4e-79 299.3 312 53.2
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 6.5e-78 295.0 278 55.0
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.9e-77 293.5 282 51.8
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 1.2e-76 290.8 211 66.4
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 3.5e-76 289.3 236 58.9
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 7.9e-76 288.1 211 66.4
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 3.0e-75 286.2 242 60.7
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 3.9e-75 285.8 238 58.0
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.4e-72 277.3 317 48.6
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 1.5e-71 273.9 321 49.2
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.6e-71 273.1 213 63.8
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 7.9e-68 261.5 210 58.6
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 2.2e-62 243.4 254 46.1
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.1e-61 241.1 324 46.0
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.4e-56 223.4 233 51.1
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 2.4e-56 223.4 233 51.1
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 9.1e-56 221.5 243 51.4
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 7.2e-53 211.8 297 40.1
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 3.6e-52 209.5 243 50.2
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 1.8e-51 207.2 219 51.6
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.6e-50 203.4 268 44.8
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 4.4e-50 202.6 226 46.5
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-47 194.5 203 53.7
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.9e-46 189.9 216 42.6
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.9e-45 187.2 309 36.6
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 8.2e-41 171.8 188 48.4
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 6.5e-38 162.2 243 42.0
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 4.7e-36 156.0 189 48.7
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 6.1e-36 155.6 218 42.2
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 4.0e-35 152.9 196 39.8
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 2.0e-34 150.6 162 50.0
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 3.7e-33 146.4 278 36.7
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 6.3e-33 145.6 201 40.3
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 5.9e-31 139.0 161 47.8
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 1.1e-29 134.8 278 31.7
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 3.2e-29 133.3 93 66.7
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 7.2e-29 132.1 98 59.2
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 4.9e-25 119.4 110 53.6
Cfa026181 Carpinus fangiana HOM05D002398 ORTHO05D000038 7.8e-15 85.5 275 23.3
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 7.8e-15 85.5 193 28.0
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 4.3e-13 79.7 194 29.9
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.4e-11 74.7 110 40.9
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 8.3e-09 65.5 46 63.0
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.7e-07 60.5 49 53.1


User provided reference genes

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