Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0138G013 Amborella trichopoda HOM05D000688 ORTHO05D005697 5.0e-54 214.2 106 100.0
Nn1g02628 Nelumbo nucifera HOM05D000688 ORTHO05D005697 7.5e-18 94.0 94 54.3
Thhalv10006599m.g Eutrema salsugineum HOM05D000688 ORTHO05D005697 3.7e-17 91.7 94 51.1
Sp1g25790 Schrenkiella parvula HOM05D000688 ORTHO05D005697 6.4e-17 90.9 94 51.1
Migut.B01339 Erythranthe guttata HOM05D000688 ORTHO05D005697 8.3e-17 90.5 94 55.3
THA.LOC104799325 Tarenaya hassleriana HOM05D000688 ORTHO05D005697 8.3e-17 90.5 94 52.1
PSO339G3101 Papaver somniferum HOM05D000688 ORTHO05D005697 1.1e-16 90.1 100 54.0
MBI06_g17216_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D005697 2.4e-16 89.0 105 51.4
Ciclev10024768m.g Citrus clementina HOM05D000688 ORTHO05D005697 3.2e-16 88.6 94 51.1
PSO384G4547 Papaver somniferum HOM05D000688 ORTHO05D005697 3.2e-16 88.6 100 54.0
Carub.0001s2816 Capsella rubella HOM05D000688 ORTHO05D005697 4.1e-16 88.2 94 46.8
CsaV3_6G035750 Cucumis sativus L. HOM05D000688 ORTHO05D005697 4.1e-16 88.2 87 55.2
Nitab4.5_0001542g0120 Nicotiana tabacum HOM05D000688 ORTHO05D005697 4.1e-16 88.2 92 51.1
Nitab4.5_0003951g0030 Nicotiana tabacum HOM05D000688 ORTHO05D005697 4.1e-16 88.2 92 51.1
Aa31LG10G7670 Aethionema arabicum HOM05D000688 ORTHO05D005697 5.4e-16 87.8 94 47.9
Thhalv10006600m.g Eutrema salsugineum HOM05D000688 ORTHO05D005697 7.1e-16 87.4 94 48.9
ECA236G4343 Erigeron canadensis HOM05D000688 ORTHO05D005697 9.2e-16 87.0 94 48.9
TAR633G0469 Trochodendron aralioides HOM05D000688 ORTHO05D005697 9.2e-16 87.0 94 51.1
AL1G43780 Arabidopsis lyrata HOM05D000688 ORTHO05D005697 1.2e-15 86.7 94 47.9
BcaC06g35474 Brassica carinata HOM05D000688 ORTHO05D005697 1.2e-15 86.7 92 48.9
A07p10140 Brassica napus HOM05D000688 ORTHO05D005697 1.2e-15 86.7 92 48.9
C07p15670 Brassica napus HOM05D000688 ORTHO05D005697 1.2e-15 86.7 92 48.9
BolC7t42057H Brassica oleracea HOM05D000688 ORTHO05D005697 1.2e-15 86.7 92 48.9
BraA07t28807Z Brassica rapa HOM05D000688 ORTHO05D005697 1.2e-15 86.7 92 48.9
MELO3C011383.2 Cucumis melo HOM05D000688 ORTHO05D005697 1.2e-15 86.7 87 54.0
Sed0023837 Sechium edule HOM05D000688 ORTHO05D005697 1.2e-15 86.7 110 46.4
Atru.chr12.1270 Acer truncatum HOM05D000688 ORTHO05D005697 2.1e-15 85.9 92 52.2
Atru.chr12.1303 Acer truncatum HOM05D000688 ORTHO05D005697 2.1e-15 85.9 92 52.2
AT1G29940 Arabidopsis thaliana HOM05D000688 ORTHO05D005697 2.1e-15 85.9 94 46.8
BcaB03g13851 Brassica carinata HOM05D000688 ORTHO05D005697 2.1e-15 85.9 94 47.9
ClCG08G010800 Citrullus lanatus HOM05D000688 ORTHO05D005697 2.1e-15 85.9 91 51.6
Hma1.2p1_1796F.1_g302740 Hydrangea macrophylla HOM05D000688 ORTHO05D005697 2.1e-15 85.9 94 53.2
Hma1.2p1_1796F.1_g302760 Hydrangea macrophylla HOM05D000688 ORTHO05D005697 2.1e-15 85.9 94 53.2
Sabra01G0022100 Salix brachista HOM05D000688 ORTHO05D005697 2.1e-15 85.9 94 54.3
CARHR029500 Cardamine hirsuta HOM05D000688 ORTHO05D005697 2.7e-15 85.5 94 47.9
FAN01G1757 Fragaria x ananassa HOM05D000688 ORTHO05D005697 2.7e-15 85.5 94 50.0
QL04p021099 Quercus lobata HOM05D000688 ORTHO05D005697 2.7e-15 85.5 95 48.4
SGA_v2.0_scaffold260G45868 Striga asiatica HOM05D000688 ORTHO05D005697 2.7e-15 85.5 94 50.0
FAN08G1568 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.5e-15 85.1 94 48.9
GSVIVG01036642001 Vitis vinifera HOM05D000688 ORTHO05D005697 3.5e-15 85.1 100 49.0
Eucgr.G03213 Eucalyptus grandis HOM05D000688 ORTHO05D005697 4.6e-15 84.7 94 50.0
Sc10g0004560 Simmondsia chinensis HOM05D000688 ORTHO05D005697 4.6e-15 84.7 91 49.5
Cc11_g03150 Coffea canephora HOM05D000688 ORTHO05D005697 6.0e-15 84.3 108 46.3
Potri.001G030750 Populus trichocarpa HOM05D000688 ORTHO05D005697 6.0e-15 84.3 94 52.1
Lj7C267G3 Lonicera japonica HOM05D000688 ORTHO05D005697 7.8e-15 84.0 94 48.9
Peaxi162Scf00058g00317 Petunia axillaris HOM05D000688 ORTHO05D005697 7.8e-15 84.0 94 46.8
PGR031G2571 Punica granatum HOM05D000688 ORTHO05D005697 7.8e-15 84.0 100 47.0
Dinv32011 Davidia involucrata HOM05D000688 ORTHO05D005697 1.0e-14 83.6 94 50.0
RcHm_v2.0_Chr1g0339591 Rosa chinensis HOM05D000688 ORTHO05D005697 1.0e-14 83.6 94 47.9
CANSAT01G0672 Cannabis sativa HOM05D000688 ORTHO05D005697 1.3e-14 83.2 100 47.0
MSTRG.23938 Avicennia marina HOM05D000688 ORTHO05D005697 1.7e-14 82.8 94 50.0
AUR62015017 Chenopodium quinoa HOM05D000688 ORTHO05D005697 1.7e-14 82.8 94 48.9
AUR62029096 Chenopodium quinoa HOM05D000688 ORTHO05D005697 1.7e-14 82.8 94 48.9
FvH4_7g07420 Fragaria vesca HOM05D000688 ORTHO05D005697 1.7e-14 82.8 94 48.9
FAN10G3028 Fragaria x ananassa HOM05D000688 ORTHO05D005697 1.7e-14 82.8 94 48.9
FAN06G2747 Fragaria x ananassa HOM05D000688 ORTHO05D005697 2.3e-14 82.4 94 48.9
CSS0007151 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D005697 3.0e-14 82.0 94 47.9
CSS0026386 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D005697 3.0e-14 82.0 94 47.9
CAN.G1393.16 Capsicum annuum HOM05D000688 ORTHO05D005697 3.0e-14 82.0 94 43.6
DCAR_019382 Daucus carota HOM05D000688 ORTHO05D005697 3.0e-14 82.0 94 51.1
FvH4_5g25870 Fragaria vesca HOM05D000688 ORTHO05D005697 3.9e-14 81.6 94 47.9
Solyc01g086710.4 Solanum lycopersicum HOM05D000688 ORTHO05D005697 3.9e-14 81.6 94 45.7
Sopen01g033710 Solanum pennellii HOM05D000688 ORTHO05D005697 3.9e-14 81.6 94 45.7
HPP92_008588 Vanilla planifolia HOM05D000688 ORTHO05D005697 3.9e-14 81.6 94 55.3
Aqoxy2G00414 Aquilegia oxysepala HOM05D000688 ORTHO05D005697 8.6e-14 80.5 94 50.0
MD08G1237100 Malus domestica HOM05D000688 ORTHO05D005697 8.6e-14 80.5 91 51.6
Prupe.1G574600 Prunus persica HOM05D000688 ORTHO05D005697 8.6e-14 80.5 94 50.0
Rhsim07G0068800 Rhododendron simsii HOM05D000688 ORTHO05D005697 1.1e-13 80.1 94 45.7
TWI15G1069 Tripterygium wilfordii HOM05D000688 ORTHO05D005697 1.1e-13 80.1 94 48.9
HanXRQChr04g0119011 Helianthus annuus HOM05D000688 ORTHO05D005697 1.5e-13 79.7 94 45.7
Lsat_1_v5_gn_7_31561 Lactuca sativa HOM05D000688 ORTHO05D005697 1.5e-13 79.7 94 46.8
EL10Ac2g02765 Beta vulgaris HOM05D000688 ORTHO05D005697 3.3e-13 78.6 94 48.9
Hund15747 Selenicereus undatus HOM05D000688 ORTHO05D005697 3.3e-13 78.6 94 47.9
vmacro13766 Vaccinium macrocarpon HOM05D000688 ORTHO05D005697 3.3e-13 78.6 81 49.4
Cfa010946 Carpinus fangiana HOM05D000688 ORTHO05D005697 5.6e-13 77.8 94 42.6
Manes.04G156600 Manihot esculenta HOM05D000688 ORTHO05D005697 5.6e-13 77.8 94 47.9
Glyma.13G192600 Glycine max HOM05D000688 ORTHO05D005697 9.5e-13 77.0 100 45.0
Thecc.10G143000 Theobroma cacao HOM05D000688 ORTHO05D005697 1.2e-12 76.6 94 45.7
CiPaw.06G056500 Carya illinoinensis HOM05D000688 ORTHO05D005697 1.6e-12 76.3 94 44.7
Phvul.011G201300 Phaseolus vulgaris HOM05D000688 ORTHO05D005697 1.6e-12 76.3 94 44.7
unitig_8.g3855 Utricularia gibba HOM05D000688 ORTHO05D005697 2.8e-12 75.5 93 46.2
Psat2g146640 Pisum sativum HOM05D000688 ORTHO05D005697 3.6e-12 75.1 94 41.5
Ah.10g030020 Amaranthus hybridus HOM05D000688 ORTHO05D005697 4.7e-12 74.7 87 48.3
Ca_00571_v3 Cicer arietinum L. HOM05D000688 ORTHO05D005697 4.7e-12 74.7 94 42.6
Haze_03000 Corylus avellana HOM05D000688 ORTHO05D005697 4.7e-12 74.7 94 41.5
Glyma.17G183400 Glycine max HOM05D000688 ORTHO05D005697 8.1e-12 73.9 94 42.6
Gohir.A10G189000 Gossypium hirsutum HOM05D000688 ORTHO05D005697 8.1e-12 73.9 94 45.7
Duzib106G0283 Durio zibethinus HOM05D000688 ORTHO05D005697 1.4e-11 73.2 94 44.7
Gohir.D10G196900 Gossypium hirsutum HOM05D000688 ORTHO05D005697 1.8e-11 72.8 94 44.7
Gorai.011G220100 Gossypium raimondii HOM05D000688 ORTHO05D005697 1.8e-11 72.8 94 44.7
Lj3g0023740 Lotus japonicus HOM05D000688 ORTHO05D005697 2.3e-11 72.4 94 42.6
arahy.Tifrunner.gnm1.ann1.91DTPA Arachis hypogaea HOM05D000688 ORTHO05D005697 6.8e-11 70.9 94 45.7
TPR.G8542 Trifolium pratense HOM05D000688 ORTHO05D005697 6.8e-11 70.9 94 42.6
Lalb_Chr03g0032171 Lupinus albus HOM05D000688 ORTHO05D005697 8.9e-11 70.5 95 43.2
SHI03904 Sapria himalayana HOM05D000688 ORTHO05D005697 2.0e-10 69.3 81 45.7
Os10g0495600 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D005697 4.4e-10 68.2 107 36.4
Medtr4g124030 Medicago truncatula HOM05D000688 ORTHO05D005697 7.6e-10 67.4 94 38.3
Pp3c5_14880 Physcomitrium patens HOM05D000688 ORTHO05D005697 3.8e-09 65.1 94 39.4
AagrBONN_evm.TU.Sc2ySwM_228.2856__2857 Anthoceros agrestis HOM05D000688 ORTHO05D005697 4.9e-09 64.7 94 40.4
arahy.Tifrunner.gnm1.ann1.078WK3 Arachis hypogaea HOM05D000688 ORTHO05D005697 1.9e-08 62.8 92 44.6
Zm00001eb044710 Zea mays HOM05D000688 ORTHO05D005697 7.1e-08 60.8 94 39.4
Cpa.g.sc169.36 Carica papaya HOM05D000688 ORTHO05D005697 1.0e-06 57.0 61 55.7
Mapoly0004s0090 Marchantia polymorpha HOM05D000688 ORTHO05D005697 3.9e-06 55.1 87 36.8


User provided reference genes

Program Settings