Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 1.4e-248 862.4 428 100.0
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 9.3e-192 673.7 399 83.0
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.6e-191 672.9 380 86.1
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 3.5e-191 671.8 376 87.2
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 6.0e-191 671.0 401 82.0
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 6.0e-191 671.0 380 85.5
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.0e-190 670.2 393 83.5
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 2.3e-190 669.1 379 86.0
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 3.0e-190 668.7 386 85.2
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 3.9e-190 668.3 397 82.9
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 6.7e-190 667.5 387 84.5
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 6.7e-190 667.5 378 85.7
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 8.7e-190 667.2 376 85.9
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.1e-189 666.8 397 82.6
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.9e-189 666.0 379 85.2
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 1.9e-189 666.0 397 83.1
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 2.5e-189 665.6 397 82.6
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 4.3e-189 664.8 407 80.8
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 4.3e-189 664.8 407 80.8
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 7.4e-189 664.1 376 85.6
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 9.6e-189 663.7 392 82.7
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 9.6e-189 663.7 407 80.8
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 9.6e-189 663.7 401 82.0
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 9.6e-189 663.7 399 82.2
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 1.3e-188 663.3 379 85.2
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 2.1e-188 662.5 383 83.8
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 3.7e-188 661.8 380 84.5
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 4.8e-188 661.4 395 82.3
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 6.2e-188 661.0 397 81.9
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 6.2e-188 661.0 376 85.6
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 6.2e-188 661.0 378 85.4
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 8.2e-188 660.6 398 80.7
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.1e-187 660.2 398 80.7
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.1e-187 660.2 397 81.1
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 1.4e-187 659.8 398 82.2
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.4e-187 659.8 398 81.9
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 1.8e-187 659.4 392 81.9
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 1.8e-187 659.4 410 80.7
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.8e-187 659.4 410 80.2
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 2.4e-187 659.1 408 81.1
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 2.4e-187 659.1 414 79.0
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 2.4e-187 659.1 392 82.9
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 3.1e-187 658.7 406 79.6
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 3.1e-187 658.7 393 81.7
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 3.1e-187 658.7 412 80.1
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 6.9e-187 657.5 377 84.1
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 9.0e-187 657.1 377 83.8
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 9.0e-187 657.1 376 85.9
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 9.0e-187 657.1 378 85.2
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.2e-186 656.8 416 77.9
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 1.5e-186 656.4 406 79.1
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.0e-186 656.0 404 80.7
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 2.6e-186 655.6 376 84.6
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 2.6e-186 655.6 376 84.6
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 3.4e-186 655.2 405 79.5
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 3.4e-186 655.2 375 84.3
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 3.4e-186 655.2 386 82.4
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 4.5e-186 654.8 394 81.7
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 4.5e-186 654.8 401 80.8
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 4.5e-186 654.8 401 81.3
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 5.8e-186 654.4 377 84.9
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 5.8e-186 654.4 376 84.3
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 5.8e-186 654.4 379 83.4
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 7.6e-186 654.1 405 79.8
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 1.0e-185 653.7 376 83.5
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 2.2e-185 652.5 406 79.1
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 2.2e-185 652.5 416 78.1
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.2e-185 652.5 377 83.3
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 2.9e-185 652.1 400 80.0
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 3.8e-185 651.7 377 83.6
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 1.9e-184 649.4 408 78.4
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.9e-184 649.4 376 83.2
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 1.9e-184 649.4 406 78.6
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.9e-184 649.4 384 83.6
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 1.9e-184 649.4 378 84.1
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 2.5e-184 649.0 406 78.3
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 3.2e-184 648.7 392 81.1
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 4.2e-184 648.3 385 82.6
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 5.5e-184 647.9 406 78.3
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 9.3e-184 647.1 406 78.1
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 9.3e-184 647.1 396 79.3
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 1.6e-183 646.4 397 79.8
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 2.1e-183 646.0 395 80.8
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 2.7e-183 645.6 376 83.2
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 3.5e-183 645.2 390 81.8
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 4.6e-183 644.8 376 81.9
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 1.3e-182 643.3 376 83.2
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 3.0e-182 642.1 387 81.9
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 3.9e-182 641.7 372 84.1
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 2.5e-181 639.0 364 85.4
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 4.3e-181 638.3 418 75.8
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 2.2e-180 636.0 406 77.6
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 2.8e-180 635.6 386 80.3
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 4.8e-180 634.8 397 78.3
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 4.8e-180 634.8 364 84.3
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 1.4e-179 633.3 386 80.1
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 4.1e-179 631.7 406 77.6
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.5e-178 629.8 406 76.6
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 7.7e-178 627.5 386 79.5
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.0e-177 627.1 396 78.5
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.3e-177 626.7 387 79.3
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 5.0e-177 624.8 417 74.8
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 6.5e-177 624.4 405 77.3
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.2e-175 620.2 350 85.4
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 6.1e-175 617.8 461 69.4
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 5.1e-174 614.8 375 78.9
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 6.7e-174 614.4 401 72.6
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 7.4e-173 610.9 385 79.7
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 3.7e-172 608.6 376 80.6
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.4e-171 605.9 379 77.8
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 2.0e-170 602.8 391 74.7
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 5.9e-170 601.3 364 80.2
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 7.4e-165 584.3 337 82.8
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 4.2e-160 568.5 375 72.3
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 5.5e-160 568.2 344 80.8
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 1.2e-154 550.4 401 67.3
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.2e-151 540.4 365 71.5
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 3.0e-150 535.8 374 72.7
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 7.5e-149 531.2 375 67.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 4.1e-147 525.4 295 87.8
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 2.2e-145 519.6 327 75.2
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 3.6e-143 512.3 369 71.0
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 9.2e-131 471.1 284 81.0
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 5.0e-121 438.7 295 74.9
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 6.2e-119 431.8 387 59.7
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.9e-104 383.6 263 74.5
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 4.9e-100 369.0 280 70.0
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 3.4e-69 266.5 358 40.5
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 4.5e-69 266.2 334 41.6
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 1.5e-61 241.1 178 69.7
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 4.8e-47 193.0 107 84.1
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 1.5e-45 188.0 118 78.0
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 5.7e-32 142.9 80 82.5
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 7.7e-29 132.5 80 77.5
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 6.5e-28 129.4 80 75.0
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.9e-27 127.9 125 58.4
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 7.7e-21 105.9 57 82.5
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.3e-20 105.1 76 67.1
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 1.6e-18 98.2 71 70.4
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.8e-18 97.4 218 32.6
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 4.1e-14 83.6 51 78.4
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 2.9e-07 60.8 66 48.5
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 2.9e-07 60.8 40 65.0


User provided reference genes

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