Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 2.1e-285 984.9 485 100.0
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 2.3e-271 938.3 486 95.7
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 2.6e-259 898.3 485 91.5
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 2.9e-258 894.8 485 90.7
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 8.5e-258 893.3 485 90.1
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 3.8e-250 867.8 485 87.6
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 3.0e-247 858.2 485 86.6
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 9.7e-246 853.2 485 86.2
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.8e-244 849.0 485 86.0
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 8.5e-242 840.1 487 85.6
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.1e-241 839.7 487 85.6
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 2.9e-226 788.5 487 79.3
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 3.6e-184 648.7 479 65.1
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 8.1e-184 647.5 487 63.9
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 1.4e-183 646.7 485 64.1
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 4.0e-183 645.2 485 66.6
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 6.9e-183 644.4 486 65.4
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 2.6e-182 642.5 485 66.2
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 7.6e-182 641.0 482 65.6
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 9.9e-182 640.6 488 65.2
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 1.7e-181 639.8 491 64.6
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 4.9e-181 638.3 485 65.8
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 2.4e-180 636.0 488 63.3
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 1.6e-179 633.3 493 63.5
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 2.7e-179 632.5 489 64.4
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 2.7e-179 632.5 498 63.5
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 3.5e-179 632.1 489 64.0
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 4.6e-179 631.7 492 64.0
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 6.0e-179 631.3 485 62.5
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 7.8e-179 630.9 490 64.1
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.3e-178 630.2 488 65.2
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 3.0e-178 629.0 482 63.9
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 3.3e-177 625.5 492 63.0
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 7.3e-177 624.4 488 63.7
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 9.6e-177 624.0 488 63.7
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 4.8e-176 621.7 488 61.7
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 8.1e-176 620.9 485 62.9
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 1.1e-175 620.5 488 63.9
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 1.8e-175 619.8 488 61.9
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 1.5e-174 616.7 490 63.5
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 1.5e-174 616.7 485 61.9
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 2.0e-174 616.3 485 61.4
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 2.6e-174 615.9 488 62.5
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.6e-174 615.9 485 62.1
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 7.6e-174 614.4 492 63.6
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 6.4e-173 611.3 487 61.8
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 6.4e-173 611.3 485 61.0
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 1.9e-172 609.8 494 61.3
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 3.2e-172 609.0 487 61.2
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 3.2e-172 609.0 484 62.6
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 3.2e-172 609.0 488 61.7
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 5.4e-172 608.2 483 61.3
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 1.2e-171 607.1 465 64.9
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 3.5e-171 605.5 485 61.4
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 1.0e-170 604.0 483 61.1
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 6.7e-170 601.3 485 60.4
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 1.5e-169 600.1 487 61.0
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 1.5e-169 600.1 484 61.4
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 1.9e-169 599.7 491 61.1
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 5.6e-169 598.2 490 62.0
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 7.4e-169 597.8 485 61.6
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.6e-168 596.7 488 60.9
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 4.8e-168 595.1 486 60.3
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 4.8e-168 595.1 491 61.9
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 1.8e-167 593.2 485 60.6
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 2.4e-167 592.8 485 59.8
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 4.0e-167 592.0 486 59.7
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 9.9e-166 587.4 486 59.7
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 8.4e-165 584.3 499 60.7
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 8.4e-165 584.3 486 58.8
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 1.8e-162 576.6 488 59.4
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 3.9e-162 575.5 483 58.8
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 3.3e-161 572.4 485 58.8
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 2.5e-156 556.2 504 58.1
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 6.0e-155 551.6 489 58.9
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 7.9e-155 551.2 445 60.2
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 8.2e-152 541.2 466 56.9
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 5.3e-151 538.5 479 57.0
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 6.9e-151 538.1 485 57.1
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 1.2e-147 527.3 430 59.1
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 5.1e-146 521.9 454 57.0
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 3.4e-142 509.2 375 64.3
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 5.5e-140 501.9 276 91.3
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 9.7e-137 491.1 385 59.5
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 6.9e-135 485.0 383 63.7
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 9.4e-132 474.6 502 48.2
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 1.4e-130 470.7 320 70.0
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 9.7e-129 464.5 275 84.4
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 1.7e-128 463.8 339 64.6
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 2.3e-122 443.4 317 64.7
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 3.3e-121 439.5 461 47.9
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 1.6e-115 420.6 492 43.9
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 5.7e-113 412.1 218 91.3
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 4.5e-110 402.5 439 48.3
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 1.8e-98 364.0 444 45.7
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 5.8e-97 359.0 406 45.1
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 7.0e-95 352.1 236 78.0
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.9e-93 346.3 256 64.8
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 6.6e-93 345.5 364 50.3
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 9.5e-92 341.7 397 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 3.3e-84 316.6 398 41.5
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 3.3e-84 316.6 269 59.5
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 7.3e-84 315.5 460 41.1
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 2.1e-83 313.9 300 54.0
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 4.0e-82 309.7 240 60.0
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 9.2e-79 298.5 320 51.2
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 4.0e-66 256.5 251 53.8
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 9.0e-66 255.4 204 66.2
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 4.2e-55 219.9 217 51.2
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 2.5e-47 194.1 197 52.8
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 7.1e-47 192.6 128 71.9
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 9.3e-47 192.2 128 72.7
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 4.9e-40 169.9 116 72.4
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 5.1e-29 133.3 108 63.9
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 5.9e-25 119.8 100 54.0
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 1.7e-24 118.2 116 50.9
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 7.7e-17 92.8 53 83.0
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 7.7e-17 92.8 53 83.0
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 2.6e-09 67.8 33 93.9
MD06G1157100 Malus domestica HOM05D006543 ORTHO05D008308 3.2e-07 60.8 75 45.3
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 5.5e-07 60.1 44 61.4
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 1.2e-06 58.9 68 47.1


User provided reference genes

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