Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 5.8e-121 437.6 222 100.0
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 2.7e-118 428.7 222 96.8
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 3.5e-118 428.3 222 97.7
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.3e-112 409.8 222 93.7
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.6e-110 402.9 222 92.3
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.6e-110 402.9 222 92.8
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.3e-109 399.8 222 91.4
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 1.3e-109 399.8 222 91.9
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 6.7e-109 397.5 222 91.4
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 1.1e-108 396.7 222 91.0
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 1.5e-108 396.4 222 91.4
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 1.5e-108 396.4 222 91.4
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 7.4e-108 394.0 222 91.0
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.6e-107 392.9 222 90.5
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.6e-107 392.9 222 91.0
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 6.3e-107 391.0 222 90.1
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 1.1e-106 390.2 236 86.0
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 2.4e-106 389.0 230 88.3
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.7e-99 365.2 221 83.3
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 2.1e-94 349.4 220 80.5
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 6.7e-77 291.2 220 65.9
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 3.7e-75 285.4 220 63.6
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 5.0e-72 275.0 219 66.2
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.5e-71 273.5 220 60.9
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 1.5e-71 273.5 220 65.0
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 2.5e-71 272.7 220 63.2
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 4.2e-71 271.9 220 61.8
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.8e-69 266.5 219 64.8
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.8e-69 266.5 220 61.8
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 2.3e-69 266.2 220 61.4
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 3.0e-69 265.8 220 60.0
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-69 265.8 220 61.4
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.0e-69 265.4 220 59.5
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 4.0e-69 265.4 219 62.1
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 6.8e-69 264.6 219 62.1
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-68 263.8 220 60.9
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.2e-68 263.8 220 61.8
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.5e-68 263.5 220 61.4
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 3.4e-68 262.3 207 65.7
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.8e-68 260.8 220 60.0
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.8e-68 260.8 220 60.0
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.8e-68 260.8 220 60.0
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-67 260.4 220 60.0
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-67 260.4 220 60.0
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.7e-67 260.0 221 60.2
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.7e-67 258.8 220 59.5
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.7e-67 258.8 220 59.5
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 4.8e-67 258.5 215 60.9
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.3e-67 258.1 213 61.5
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.3e-67 257.7 220 59.5
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 8.3e-67 257.7 223 59.6
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 4.1e-66 255.4 220 61.8
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 5.4e-66 255.0 219 61.6
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.2e-65 253.8 219 61.6
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 3.5e-65 252.3 219 61.6
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.0e-64 250.8 219 58.4
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.3e-64 250.4 248 55.2
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.7e-64 250.0 221 58.4
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 2.9e-64 249.2 221 59.3
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.5e-63 246.9 219 58.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 3.2e-63 245.7 219 60.7
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.2e-62 243.8 222 57.2
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.6e-62 243.4 221 55.7
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.6e-62 243.4 224 60.3
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 2.7e-62 242.7 222 58.1
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.0e-61 240.7 222 56.3
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.0e-61 240.7 219 58.0
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.4e-61 240.4 191 66.5
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 1.8e-61 240.0 219 57.5
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.8e-61 240.0 222 56.8
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 2.3e-61 239.6 222 57.7
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 3.0e-61 239.2 222 58.1
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 5.2e-61 238.4 222 57.7
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 6.8e-61 238.0 221 56.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 6.8e-61 238.0 220 57.7
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 8.8e-61 237.7 198 62.1
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 2.6e-60 236.1 219 57.1
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 3.4e-60 235.7 222 57.7
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 4.4e-60 235.3 219 56.6
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 5.7e-60 235.0 221 54.8
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 5.7e-60 235.0 220 56.8
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 5.7e-60 235.0 227 56.4
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 9.8e-60 234.2 198 61.1
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.3e-59 233.8 208 59.1
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 1.7e-59 233.4 219 57.5
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 2.2e-59 233.0 227 55.9
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 6.3e-59 231.5 219 58.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 6.3e-59 231.5 219 57.5
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.4e-58 230.3 219 56.6
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.8e-58 229.9 219 56.2
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.8e-58 229.9 222 55.9
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.8e-58 229.9 222 57.2
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 3.1e-58 229.2 203 57.6
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.4e-58 228.4 219 56.6
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 9.2e-58 227.6 221 54.3
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.6e-57 226.9 220 58.6
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 2.0e-57 226.5 214 55.6
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 4.5e-57 225.3 203 59.1
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 5.9e-57 224.9 213 57.3
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 1.3e-56 223.8 210 55.2
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 1.7e-56 223.4 194 61.9
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.8e-56 222.2 256 50.4
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 3.3e-55 219.2 231 55.0
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 9.5e-55 217.6 188 60.6
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.1e-54 216.5 220 52.3
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-54 216.5 165 66.7
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 2.8e-54 216.1 217 54.8
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.0e-53 212.6 237 53.2
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 3.0e-53 212.6 192 60.9
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 4.0e-53 212.2 232 50.0
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.2e-52 210.7 219 52.5
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.0e-52 209.9 186 61.3
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 7.5e-52 208.0 231 51.1
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 9.8e-52 207.6 276 46.7
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 4.9e-51 205.3 123 87.8
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.4e-50 203.8 209 55.5
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.5e-47 193.0 265 44.9
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 2.5e-47 193.0 197 55.8
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 3.6e-46 189.1 192 55.2
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 4.7e-46 188.7 217 52.1
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 1.0e-45 187.6 195 52.3
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 4.0e-45 185.7 155 65.8
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 2.9e-43 179.5 327 36.1
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.1e-42 177.6 250 43.2
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.1e-42 175.6 155 60.6
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 6.0e-41 171.8 138 68.1
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.7e-40 170.2 147 59.2
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.5e-39 167.2 135 65.2
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 9.5e-39 164.5 200 52.0
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.6e-38 163.7 171 53.8
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 2.8e-38 162.9 140 65.0
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 8.1e-38 161.4 146 59.6
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 7.1e-34 148.3 169 53.3
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 2.5e-31 139.8 97 78.4
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.2e-28 131.0 95 63.2
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.4e-28 129.4 144 52.8
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 3.0e-24 116.3 181 38.7
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 3.1e-21 106.3 179 35.2
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.1e-21 106.3 178 34.3
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 4.0e-21 105.9 91 58.2
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 5.8e-20 102.1 125 46.4
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 6.4e-19 98.6 151 42.4
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 1.6e-17 94.0 184 31.5
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 1.6e-17 94.0 152 42.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.8e-14 82.4 60 58.3
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.1e-13 81.3 96 44.8
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 9.0e-13 78.2 99 42.4
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 7.6e-12 75.1 50 70.0
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 2.1e-09 67.0 146 36.3
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.7e-09 66.6 59 52.5
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 2.3e-08 63.5 180 30.0


User provided reference genes

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