Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.2e-101 373.2 192 100.0
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 5.6e-96 354.4 192 95.3
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 5.2e-94 347.8 192 93.2
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 1.5e-88 329.7 192 88.5
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 5.6e-88 327.8 186 89.8
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 2.6e-85 318.9 188 86.2
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 2.6e-85 318.9 188 86.2
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 2.2e-84 315.8 187 85.6
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 2.9e-84 315.5 188 86.2
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 4.9e-84 314.7 187 86.1
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 1.4e-83 313.2 187 85.6
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 5.4e-83 311.2 185 87.0
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 5.4e-83 311.2 186 86.0
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 1.3e-79 300.1 190 82.1
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 2.4e-78 295.8 190 79.5
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 3.8e-76 288.5 189 76.7
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 6.4e-76 287.7 190 76.3
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 6.4e-76 287.7 190 76.3
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 8.4e-76 287.3 189 77.2
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 7.1e-75 284.3 190 77.4
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 7.1e-75 284.3 187 77.5
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 9.3e-75 283.9 192 74.5
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 6.0e-74 281.2 190 74.2
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 7.9e-74 280.8 190 76.8
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 1.0e-73 280.4 188 75.0
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 1.0e-73 280.4 194 74.2
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 1.8e-73 279.6 190 74.7
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 3.9e-73 278.5 190 75.8
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 5.1e-73 278.1 190 74.7
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 5.1e-73 278.1 188 75.5
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 6.7e-73 277.7 190 73.7
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 6.7e-73 277.7 190 75.3
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 6.7e-73 277.7 188 74.5
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.7e-73 277.3 186 74.2
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.7e-73 277.3 186 74.2
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 1.5e-72 276.6 187 74.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-72 276.2 186 73.7
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.9e-72 276.2 190 74.2
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 3.3e-72 275.4 200 71.0
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 4.3e-72 275.0 189 73.0
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 4.3e-72 275.0 190 76.3
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 4.3e-72 275.0 190 74.7
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 7.4e-72 274.2 190 72.1
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 9.6e-72 273.9 190 73.2
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 1.3e-71 273.5 188 73.4
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 1.3e-71 273.5 190 72.6
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 1.3e-71 273.5 190 72.6
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 1.3e-71 273.5 190 71.1
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 1.6e-71 273.1 190 71.6
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 1.6e-71 273.1 190 71.1
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 1.6e-71 273.1 190 71.6
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 2.1e-71 272.7 187 73.3
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 2.1e-71 272.7 190 72.1
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.1e-71 272.7 189 74.6
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 2.8e-71 272.3 190 70.5
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 2.8e-71 272.3 187 73.3
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 2.8e-71 272.3 190 71.1
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 3.7e-71 271.9 192 73.4
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 6.2e-71 271.2 190 71.6
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 6.2e-71 271.2 190 72.1
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 8.2e-71 270.8 190 69.5
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 8.2e-71 270.8 192 72.4
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 1.1e-70 270.4 190 72.6
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 1.1e-70 270.4 187 73.3
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 1.1e-70 270.4 190 72.1
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 1.8e-70 269.6 166 82.5
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 1.8e-70 269.6 190 71.6
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.8e-70 269.6 190 73.2
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.0e-70 268.5 186 74.7
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 5.3e-70 268.1 194 72.2
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 9.0e-70 267.3 196 70.9
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 1.5e-69 266.5 187 71.7
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 2.6e-69 265.8 186 73.1
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 4.5e-69 265.0 192 73.4
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 4.5e-69 265.0 190 72.1
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 1.0e-68 263.8 189 71.4
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 1.3e-68 263.5 190 68.9
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 8.4e-68 260.8 217 66.4
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.1e-67 260.4 188 71.3
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 1.9e-67 259.6 186 72.0
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 2.5e-67 259.2 180 72.2
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 5.5e-67 258.1 186 70.4
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 1.6e-66 256.5 190 70.5
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 7.9e-66 254.2 176 72.2
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.1e-64 250.4 188 64.9
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.9e-64 249.6 185 69.2
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 3.3e-64 248.8 245 57.1
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 3.3e-64 248.8 245 57.1
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 7.9e-58 227.6 159 74.8
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 3.0e-57 225.7 183 61.7
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 5.1e-57 224.9 185 60.0
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 2.8e-55 219.2 147 74.8
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 1.5e-53 213.4 183 59.0
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 7.7e-53 211.1 159 71.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.0e-52 210.7 187 63.1
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.3e-52 210.3 186 62.9
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 2.2e-52 209.5 252 52.8
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 8.5e-52 207.6 187 61.5
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 5.9e-45 184.9 130 73.8
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 1.7e-44 183.3 138 68.8
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 6.5e-44 181.4 134 67.2
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.1e-43 180.6 109 82.6
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 2.5e-43 179.5 113 77.9
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 9.4e-43 177.6 109 79.8
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 1.4e-41 173.7 135 63.7
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 5.7e-40 168.3 130 66.2
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.6e-37 160.2 200 45.5
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 8.5e-36 154.5 187 47.6
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 8.5e-36 154.5 85 89.4
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 3.3e-32 142.5 102 70.6
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 2.0e-29 133.3 106 60.4
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 2.2e-28 129.8 132 51.5
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 6.5e-28 128.3 110 60.9
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 1.6e-26 123.6 140 55.0
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 3.0e-25 119.4 136 55.1
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 8.8e-25 117.9 132 52.3
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 4.1e-22 109.0 60 88.3
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.0e-20 104.4 197 34.5
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 6.3e-15 85.1 74 60.8
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.5e-11 73.2 74 55.4
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 3.6e-10 69.3 109 40.4
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 8.0e-10 68.2 53 66.0
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 9.8e-08 61.2 51 56.9


User provided reference genes

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