Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 5.7e-83 310.8 154 100.0
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.1e-16 89.7 59 76.3
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.1e-16 89.7 59 76.3
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 2.1e-16 89.7 59 76.3
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.1e-16 89.7 59 76.3
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.1e-16 89.7 59 76.3
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 2.1e-16 89.7 59 76.3
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 7.9e-16 87.8 59 74.6
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.0e-15 87.4 59 74.6
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 8.7e-15 84.3 59 72.9
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 8.7e-15 84.3 59 72.9
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.1e-14 84.0 59 71.2
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 5.6e-14 81.6 59 67.8
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 2.1e-13 79.7 59 69.5
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.4e-12 77.0 59 62.7
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 4.0e-12 75.5 59 64.4
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 5.3e-12 75.1 59 62.7
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.3e-12 75.1 59 62.7
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.3e-12 75.1 59 62.7
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 5.3e-12 75.1 59 62.7
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 9.0e-12 74.3 59 57.6
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.0e-11 73.2 59 61.0
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 2.6e-11 72.8 59 61.0
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.6e-11 72.8 59 59.3
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 3.4e-11 72.4 59 59.3
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 4.5e-11 72.0 59 61.0
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.5e-11 72.0 59 61.0
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 4.5e-11 72.0 60 58.3
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 7.6e-11 71.2 59 59.3
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 9.9e-11 70.9 59 57.6
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 9.9e-11 70.9 59 61.0
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 9.9e-11 70.9 59 57.6
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.3e-10 70.5 65 53.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.3e-10 70.5 59 61.0
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.3e-10 70.5 59 57.6
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.7e-10 70.1 59 57.6
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.7e-10 70.1 59 59.3
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.7e-10 70.1 59 61.0
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.2e-10 69.7 59 61.0
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 2.2e-10 69.7 59 57.6
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 2.2e-10 69.7 59 55.9
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 2.2e-10 69.7 59 57.6
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.9e-10 69.3 59 61.0
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.9e-10 69.3 59 59.3
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.9e-10 69.3 59 57.6
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.9e-10 69.3 59 61.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.8e-10 68.9 59 57.6
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 3.8e-10 68.9 59 59.3
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 3.8e-10 68.9 94 40.4
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 3.8e-10 68.9 59 55.9
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.8e-10 68.9 59 57.6
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 4.9e-10 68.6 59 59.3
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 4.9e-10 68.6 59 57.6
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 4.9e-10 68.6 59 57.6
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 4.9e-10 68.6 59 57.6
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.4e-10 68.2 59 59.3
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.4e-10 68.2 59 59.3
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 6.4e-10 68.2 59 57.6
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.4e-10 67.8 59 59.3
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 8.4e-10 67.8 61 52.5
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 8.4e-10 67.8 59 55.9
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 8.4e-10 67.8 59 55.9
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 8.4e-10 67.8 59 57.6
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-09 67.4 57 56.1
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.1e-09 67.4 59 55.9
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.4e-09 67.0 59 57.6
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.4e-09 67.0 59 55.9
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.4e-09 67.0 59 59.3
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.9e-09 66.6 59 55.9
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.4e-09 66.2 59 59.3
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.4e-09 66.2 59 54.2
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 3.2e-09 65.9 59 55.9
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 3.2e-09 65.9 59 55.9
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 3.2e-09 65.9 61 50.8
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 3.2e-09 65.9 59 59.3
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 3.2e-09 65.9 59 55.9
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 4.2e-09 65.5 59 54.2
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 4.2e-09 65.5 59 55.9
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 5.5e-09 65.1 59 55.9
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 5.5e-09 65.1 59 54.2
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 5.5e-09 65.1 59 52.5
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 7.1e-09 64.7 59 52.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 7.1e-09 64.7 59 54.2
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 9.3e-09 64.3 59 55.9
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 9.3e-09 64.3 59 55.9
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.3e-09 64.3 59 52.5
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.2e-08 63.9 59 52.5
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 1.6e-08 63.5 57 56.1
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.7e-08 62.8 59 52.5
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 3.5e-08 62.4 68 51.5
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 3.5e-08 62.4 59 54.2
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 4.6e-08 62.0 59 50.8
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 4.6e-08 62.0 59 54.2
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 4.6e-08 62.0 59 52.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 6.0e-08 61.6 59 49.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.9e-08 61.2 59 52.5
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.3e-07 60.5 59 47.5
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.3e-07 60.5 59 49.2
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.3e-07 60.5 59 52.5
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.3e-07 60.5 59 52.5
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.8e-07 60.1 59 49.2
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.3e-07 59.7 59 50.8
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.3e-07 59.7 68 47.1
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 3.0e-07 59.3 55 50.9
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.1e-07 58.5 61 45.9
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.7e-07 58.2 59 47.5
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 6.7e-07 58.2 59 47.5
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.1e-06 57.4 58 48.3
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 5.6e-06 55.1 47 59.6
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 7.4e-06 54.7 58 53.4


User provided reference genes

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