Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.8e-86 322.8 188 100.0
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.4e-69 265.4 193 88.6
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.4e-67 260.0 193 87.6
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.8e-65 251.9 192 87.5
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.1e-64 250.4 186 86.0
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 7.5e-61 237.7 187 82.4
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 9.8e-61 237.3 191 82.2
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 4.9e-60 235.0 191 81.7
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.0e-58 229.6 185 80.0
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.4e-45 185.3 106 90.6
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 1.1e-40 170.6 191 64.4
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.6e-39 165.6 103 84.5
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 4.7e-39 165.2 191 62.3
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.9e-32 143.3 184 51.1
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.9e-32 143.3 184 51.1
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 7.3e-32 141.4 145 56.6
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 6.8e-30 134.8 145 53.8
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 6.8e-30 134.8 181 57.5
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 3.8e-28 129.0 194 47.4
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.1e-22 110.9 201 47.8
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 9.0e-22 107.8 185 41.6
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 9.0e-22 107.8 185 41.6
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 2.0e-21 106.7 145 44.8
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 3.4e-21 105.9 204 38.7
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 7.6e-21 104.8 142 47.9
BraA08t33469Z Brassica rapa HOM05D007946 ORTHO05D004325 7.6e-21 104.8 164 43.3
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 9.9e-21 104.4 184 40.8
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 1.7e-20 103.6 136 47.1
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 2.9e-20 102.8 186 40.3
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 4.9e-20 102.1 147 44.2
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 4.9e-20 102.1 164 40.2
BolC6t35453H Brassica oleracea HOM05D007946 ORTHO05D004325 4.9e-20 102.1 164 40.2
A06p04090 Brassica napus HOM05D007946 ORTHO05D004325 1.1e-19 100.9 168 41.1
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 1.1e-19 100.9 181 40.3
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 1.4e-19 100.5 167 43.1
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 2.4e-19 99.8 159 40.3
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 2.4e-19 99.8 159 40.3
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 2.4e-19 99.8 184 39.7
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 2.4e-19 99.8 164 39.6
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 4.2e-19 99.0 148 41.2
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 7.1e-19 98.2 161 44.1
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 7.1e-19 98.2 184 35.9
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 9.3e-19 97.8 174 40.2
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 9.3e-19 97.8 174 40.2
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 1.2e-18 97.4 147 42.9
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 1.2e-18 97.4 147 42.9
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 3.0e-17 92.8 151 41.7
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 3.0e-17 92.8 157 39.5
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 3.0e-17 92.8 157 39.5
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 5.1e-17 92.0 154 40.3
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 5.1e-17 92.0 154 40.3
BolC6t35438H Brassica oleracea HOM05D007946 ORTHO05D004325 6.6e-17 91.7 145 39.3
C06p03600 Brassica napus HOM05D007946 ORTHO05D004325 9.6e-16 87.8 119 42.0
C06p38290 Brassica napus HOM05D007946 ORTHO05D004325 3.6e-15 85.9 108 46.3
BolC6t38928H Brassica oleracea HOM05D007946 ORTHO05D004325 3.6e-15 85.9 108 46.3
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 3.6e-15 85.9 204 33.8
BcaB04g17499 Brassica carinata HOM05D007946 ORTHO05D004325 9.0e-14 81.3 163 37.4
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.6e-13 79.7 153 38.6
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.5e-13 79.0 119 42.0
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 7.6e-13 78.2 125 42.4
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 7.6e-13 78.2 69 60.9
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 7.6e-13 78.2 69 60.9
Thhalv10019780m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 9.9e-13 77.8 101 46.5
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.7e-12 77.0 63 63.5
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 3.8e-12 75.9 132 39.4
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 6.4e-12 75.1 80 52.5
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 6.4e-12 75.1 69 58.0
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 6.4e-12 75.1 80 52.5
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 8.4e-12 74.7 108 45.4
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.4e-12 74.7 129 39.5
A09p32530 Brassica napus HOM05D007946 ORTHO05D004325 8.4e-12 74.7 170 36.5
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 8.4e-12 74.7 119 44.5
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 1.1e-11 74.3 145 40.0
BolC8t50655H Brassica oleracea HOM05D007946 ORTHO05D004325 1.1e-11 74.3 160 38.1
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 1.1e-11 74.3 62 61.3
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.4e-11 73.9 115 43.5
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 1.4e-11 73.9 173 34.1
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 1.4e-11 73.9 69 58.0
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 1.9e-11 73.6 69 56.5
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.4e-11 73.2 108 44.4
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.4e-11 73.2 161 35.4
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 3.2e-11 72.8 71 54.9
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 3.2e-11 72.8 125 41.6
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 5.4e-11 72.0 71 53.5
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 5.4e-11 72.0 60 61.7
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 5.4e-11 72.0 60 61.7
BraA09t38795Z Brassica rapa HOM05D007946 ORTHO05D004325 5.4e-11 72.0 159 37.1
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.1e-11 71.6 108 44.4
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 7.1e-11 71.6 69 55.1
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 9.3e-11 71.2 107 42.1
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 9.3e-11 71.2 74 54.1
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.2e-10 70.9 80 52.5
BraA09t40264Z Brassica rapa HOM05D007946 ORTHO05D004325 1.2e-10 70.9 158 36.1
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 2.1e-10 70.1 63 57.1
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 2.1e-10 70.1 129 37.2
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 4.6e-10 68.9 46 65.2
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 6.0e-10 68.6 59 57.6
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 7.9e-10 68.2 127 38.6
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 1.3e-09 67.4 69 55.1
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 1.8e-09 67.0 78 50.0
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.3e-09 66.6 120 38.3
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 2.3e-09 66.6 127 35.4
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 3.0e-09 66.2 112 41.1
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 3.0e-09 66.2 69 55.1
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 3.0e-09 66.2 69 53.6
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 3.0e-09 66.2 69 53.6
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.9e-09 65.9 188 30.9
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 3.9e-09 65.9 128 39.1
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 3.9e-09 65.9 128 39.1
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 3.9e-09 65.9 128 39.1
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.9e-09 65.9 142 33.8
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 5.1e-09 65.5 62 53.2
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 5.1e-09 65.5 166 33.7
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 1.1e-08 64.3 108 40.7
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 1.5e-08 63.9 84 45.2
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.9e-08 63.5 134 36.6
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 1.9e-08 63.5 117 43.6
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.5e-08 63.2 174 33.3
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.5e-08 63.2 151 34.4
BcaNung05019 Brassica carinata HOM05D007946 ORTHO05D004325 3.3e-08 62.8 99 38.4
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.3e-08 62.4 118 53.4
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.6e-08 62.0 88 44.3
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.6e-08 62.0 69 50.7
BcaC07g39832 Brassica carinata HOM05D007946 ORTHO05D004325 5.6e-08 62.0 186 33.9
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.6e-08 62.0 161 30.4
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.6e-08 62.0 127 37.0
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.3e-07 60.8 205 28.8
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.6e-07 60.5 128 36.7
BcaC08g43096 Brassica carinata HOM05D007946 ORTHO05D004325 2.1e-07 60.1 97 38.1
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.8e-07 59.7 194 28.9
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 3.7e-07 59.3 208 28.8
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 3.7e-07 59.3 173 30.6
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.7e-07 59.3 72 48.6
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 4.8e-07 58.9 88 46.6
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 4.8e-07 58.9 41 65.9
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 6.2e-07 58.5 141 51.1
Sp1g35560 Schrenkiella parvula HOM05D007946 ORTHO05D004325 6.2e-07 58.5 100 42.0
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 1.4e-06 57.4 54 50.0
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 1.4e-06 57.4 93 36.6
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 4.0e-06 55.8 73 50.7
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 5.3e-06 55.5 76 42.1
Zm00001eb243490 Zea mays HOM05D000307 ORTHO05D000166 5.3e-06 55.5 64 37.5
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 9.0e-06 54.7 170 28.8


User provided reference genes

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