Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.4e-145 518.5 290 100.0
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 6.0e-134 481.1 291 95.2
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 8.4e-112 407.5 294 83.7
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.6e-105 386.0 291 81.1
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.3e-101 372.9 279 81.7
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.1e-98 364.0 278 81.3
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 7.2e-87 324.7 226 87.6
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 9.4e-87 324.3 226 86.7
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 1.8e-77 293.5 302 65.9
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 2.6e-76 289.7 298 66.4
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 8.3e-67 258.1 193 87.6
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.2e-52 211.1 323 46.4
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.1e-45 186.4 115 82.6
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 3.1e-45 186.4 342 42.1
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.7e-41 173.3 112 83.0
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.6e-38 164.1 249 47.0
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 6.2e-38 162.2 317 46.4
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 2.0e-36 157.1 322 44.4
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 6.2e-30 135.6 271 39.5
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 1.1e-29 134.8 266 39.1
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 5.2e-29 132.5 271 39.1
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 8.9e-29 131.7 271 38.7
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 1.2e-28 131.3 261 40.2
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 4.4e-28 129.4 146 52.7
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 5.8e-28 129.0 269 38.3
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 5.8e-28 129.0 269 38.3
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 9.9e-28 128.3 146 51.4
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 1.3e-27 127.9 267 37.5
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 1.9e-26 124.0 197 40.6
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 2.4e-26 123.6 295 35.9
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 3.2e-26 123.2 307 35.8
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 2.7e-25 120.2 279 36.6
BolC6t35453H Brassica oleracea HOM05D007946 ORTHO05D004325 2.7e-25 120.2 279 36.6
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 3.5e-25 119.8 269 37.2
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 6.0e-25 119.0 257 37.4
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 6.0e-25 119.0 260 36.9
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 1.0e-24 118.2 272 35.7
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 1.7e-24 117.5 274 36.5
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 3.9e-24 116.3 306 34.6
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 3.9e-24 116.3 306 34.6
A06p04090 Brassica napus HOM05D007946 ORTHO05D004325 1.9e-23 114.0 303 35.0
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 2.5e-23 113.6 256 36.3
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 8.1e-22 108.6 230 35.2
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 8.1e-22 108.6 230 35.2
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 1.8e-21 107.5 275 36.4
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 1.8e-21 107.5 275 36.4
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 2.4e-21 107.1 268 34.0
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 5.2e-21 105.9 236 35.6
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 5.2e-21 105.9 236 35.6
BraA08t33469Z Brassica rapa HOM05D007946 ORTHO05D004325 3.4e-20 103.2 165 43.0
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 2.4e-18 97.1 267 35.6
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 3.2e-18 96.7 168 41.7
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.2e-18 96.3 204 36.8
BcaC07g39832 Brassica carinata HOM05D007946 ORTHO05D004325 5.4e-18 95.9 271 35.4
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.6e-17 92.8 205 35.6
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 7.8e-17 92.0 231 35.1
BraA09t38795Z Brassica rapa HOM05D007946 ORTHO05D004325 7.8e-17 92.0 266 34.2
A09p32530 Brassica napus HOM05D007946 ORTHO05D004325 1.3e-16 91.3 241 34.0
BcaB04g17499 Brassica carinata HOM05D007946 ORTHO05D004325 3.0e-16 90.1 282 34.8
BraA09t40264Z Brassica rapa HOM05D007946 ORTHO05D004325 3.0e-16 90.1 264 33.0
C06p03600 Brassica napus HOM05D007946 ORTHO05D004325 5.1e-16 89.4 136 40.4
BolC6t35438H Brassica oleracea HOM05D007946 ORTHO05D004325 6.6e-16 89.0 148 39.9
Sp1g35560 Schrenkiella parvula HOM05D007946 ORTHO05D004325 8.7e-16 88.6 217 37.8
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 1.5e-15 87.8 303 31.0
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.9e-15 87.4 230 32.6
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.5e-15 87.0 238 31.9
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.5e-15 87.0 236 34.3
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.3e-14 84.7 230 31.7
C06p38290 Brassica napus HOM05D007946 ORTHO05D004325 1.6e-14 84.3 108 46.3
BolC6t38928H Brassica oleracea HOM05D007946 ORTHO05D004325 1.6e-14 84.3 108 46.3
BcaNung05019 Brassica carinata HOM05D007946 ORTHO05D004325 2.8e-14 83.6 180 37.8
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.6e-14 83.2 230 34.3
BcaB01g00129 Brassica carinata HOM05D007946 ORTHO05D004325 8.1e-14 82.0 246 34.6
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.1e-13 81.6 239 32.6
BcaC08g43096 Brassica carinata HOM05D007946 ORTHO05D004325 1.4e-13 81.3 178 37.6
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.8e-13 80.9 229 31.4
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.4e-13 80.5 237 32.1
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.1e-13 80.1 236 32.6
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 5.3e-13 79.3 227 32.2
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 5.3e-13 79.3 229 31.4
BolC8t50655H Brassica oleracea HOM05D007946 ORTHO05D004325 2.6e-12 77.0 204 35.8
Thhalv10019780m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 4.5e-12 76.3 103 44.7
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.7e-11 74.3 264 28.8
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 2.9e-11 73.6 238 29.8
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 2.9e-11 73.6 182 31.9
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 3.8e-11 73.2 250 28.4
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.8e-11 73.2 245 30.2
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 4.9e-11 72.8 69 55.1
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 4.9e-11 72.8 69 55.1
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-10 71.6 230 30.4
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 1.1e-10 71.6 230 30.4
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.4e-10 71.2 191 33.5
Sp1g35140 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.9e-10 70.9 220 34.5
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.4e-10 70.5 279 26.9
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 2.4e-10 70.5 62 56.5
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.2e-10 70.1 145 35.9
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 4.2e-10 69.7 69 52.2
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 4.2e-10 69.7 286 31.1
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 5.4e-10 69.3 97 42.3
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 7.1e-10 68.9 74 50.0
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 7.1e-10 68.9 230 30.9
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 9.3e-10 68.6 245 30.2
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 9.3e-10 68.6 78 47.4
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 1.2e-09 68.2 229 29.3
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 2.1e-09 67.4 62 53.2
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 2.7e-09 67.0 116 38.8
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.5e-09 66.6 255 28.6
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 3.5e-09 66.6 230 28.3
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 4.6e-09 66.2 238 29.0
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 4.6e-09 66.2 238 29.0
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 4.6e-09 66.2 209 30.1
Thhalv10027361m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 6.0e-09 65.9 119 45.4
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 1.0e-08 65.1 76 48.7
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.0e-08 65.1 84 42.9
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.0e-08 65.1 189 29.6
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.3e-08 64.7 116 38.8
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 1.3e-08 64.7 59 52.5
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 1.3e-08 64.7 128 38.3
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 1.3e-08 64.7 128 38.3
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 1.3e-08 64.7 128 38.3
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 1.3e-08 64.7 72 48.6
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.8e-08 64.3 166 34.3
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 3.0e-08 63.5 81 42.0
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 3.9e-08 63.2 275 28.0
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 6.7e-08 62.4 62 51.6
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.7e-08 62.4 128 36.7
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.7e-08 62.4 128 36.7
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 8.7e-08 62.0 72 44.4
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 1.5e-07 61.2 171 31.6
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 1.5e-07 61.2 105 36.2
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 1.5e-07 61.2 105 36.2
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.9e-07 60.8 193 31.6
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.9e-07 60.8 241 37.3
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.9e-07 60.8 128 36.7
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 2.5e-07 60.5 118 38.1
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 3.3e-07 60.1 118 38.1
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.3e-07 60.1 182 28.6
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 4.3e-07 59.7 88 42.0
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.6e-07 58.5 325 24.9
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 2.1e-06 57.4 87 42.5
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 2.1e-06 57.4 41 63.4
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 2.8e-06 57.0 260 26.5
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 2.8e-06 57.0 260 26.5
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 2.8e-06 57.0 93 36.6
Zm00001eb243490 Zea mays HOM05D000307 ORTHO05D000166 2.8e-06 57.0 64 39.1
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 4.8e-06 56.2 260 26.5
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 6.2e-06 55.8 83 41.0
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 6.2e-06 55.8 230 29.6
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 6.2e-06 55.8 230 29.6


User provided reference genes

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