Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.9e-63 245.7 127 100.0
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.6e-46 189.5 115 88.7
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.7e-46 188.7 115 86.1
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 5.1e-45 184.5 115 83.5
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.1e-44 183.3 115 82.6
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.5e-44 182.2 106 90.6
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 9.6e-44 180.3 115 85.2
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 4.8e-43 177.9 115 83.5
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 3.1e-42 175.3 115 82.6
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.0e-42 174.9 107 87.9
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 5.3e-42 174.5 115 81.7
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 8.4e-32 140.6 117 68.4
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 4.2e-31 138.3 117 66.7
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 6.0e-30 134.4 129 56.6
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.3e-29 133.3 120 61.7
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.3e-29 133.3 120 61.7
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 1.1e-26 123.6 107 62.6
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 5.3e-26 121.3 107 61.7
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 3.8e-24 115.2 111 60.4
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 5.5e-23 111.3 119 52.1
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 1.1e-20 103.6 107 52.3
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 4.3e-20 101.7 139 43.2
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 4.3e-20 101.7 139 43.2
BolC6t35453H Brassica oleracea HOM05D007946 ORTHO05D004325 9.7e-20 100.5 139 42.4
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 1.3e-19 100.1 139 45.3
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 1.3e-19 100.1 124 47.6
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 1.3e-19 100.1 107 49.5
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 1.3e-19 100.1 139 45.3
BraA08t33469Z Brassica rapa HOM05D007946 ORTHO05D004325 1.3e-19 100.1 124 47.6
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 2.8e-19 99.0 111 50.5
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 2.8e-19 99.0 106 52.8
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 2.8e-19 99.0 106 52.8
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 3.7e-19 98.6 107 53.3
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 3.7e-19 98.6 132 42.4
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 4.8e-19 98.2 126 44.4
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 4.8e-19 98.2 136 42.6
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 6.3e-19 97.8 116 49.1
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 1.4e-18 96.7 124 47.6
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 1.4e-18 96.7 124 47.6
A06p04090 Brassica napus HOM05D007946 ORTHO05D004325 1.4e-18 96.7 139 42.4
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 1.4e-18 96.7 106 52.8
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 4.1e-18 95.1 120 46.7
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 4.1e-18 95.1 116 48.3
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 4.1e-18 95.1 120 46.7
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 4.1e-18 95.1 116 48.3
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 5.3e-18 94.7 138 42.0
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 6.9e-18 94.4 120 46.7
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 9.0e-18 94.0 112 45.5
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 1.2e-17 93.6 116 47.4
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 1.2e-17 93.6 116 47.4
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 5.9e-17 91.3 121 43.0
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.9e-16 89.0 127 44.1
BolC6t35438H Brassica oleracea HOM05D007946 ORTHO05D004325 3.8e-16 88.6 109 44.0
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 3.8e-16 88.6 81 56.8
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 8.5e-16 87.4 127 44.1
C06p03600 Brassica napus HOM05D007946 ORTHO05D004325 2.5e-15 85.9 126 42.1
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 4.2e-15 85.1 71 64.8
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 4.2e-15 85.1 71 64.8
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 9.4e-15 84.0 87 57.5
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.2e-14 83.6 71 63.4
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.6e-14 83.2 91 56.0
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.7e-14 82.4 71 63.4
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 2.7e-14 82.4 67 65.7
C06p38290 Brassica napus HOM05D007946 ORTHO05D004325 2.7e-14 82.4 74 56.8
BolC6t38928H Brassica oleracea HOM05D007946 ORTHO05D004325 2.7e-14 82.4 74 56.8
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 2.7e-14 82.4 67 65.7
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.7e-14 82.4 81 53.1
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 6.1e-14 81.3 84 53.6
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 6.1e-14 81.3 84 53.6
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 1.4e-13 80.1 90 53.3
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.8e-13 79.7 91 53.8
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 1.8e-13 79.7 94 50.0
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.3e-13 79.3 115 44.3
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.3e-13 79.3 115 46.1
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 2.3e-13 79.3 117 43.6
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 2.3e-13 79.3 82 53.7
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 2.3e-13 79.3 88 48.9
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 2.3e-13 79.3 77 55.8
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 2.3e-13 79.3 67 62.7
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 2.3e-13 79.3 87 52.9
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 3.9e-13 78.6 67 62.7
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 6.7e-13 77.8 96 49.0
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 6.7e-13 77.8 75 56.0
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 6.7e-13 77.8 75 56.0
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.8e-13 77.4 95 51.6
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 8.8e-13 77.4 117 46.2
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 8.8e-13 77.4 71 59.2
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.1e-12 77.0 81 51.9
BcaB04g17499 Brassica carinata HOM05D007946 ORTHO05D004325 1.1e-12 77.0 130 40.0
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 1.1e-12 77.0 64 65.6
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 1.5e-12 76.6 116 44.8
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 1.9e-12 76.3 145 37.2
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 1.9e-12 76.3 145 37.2
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 1.9e-12 76.3 145 37.2
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 1.9e-12 76.3 77 54.5
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 1.9e-12 76.3 71 57.7
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 3.3e-12 75.5 78 55.1
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 4.3e-12 75.1 77 53.2
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 4.3e-12 75.1 86 50.0
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 5.7e-12 74.7 83 53.0
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 5.7e-12 74.7 64 60.9
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 1.3e-11 73.6 81 54.3
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-11 73.2 58 60.3
Thhalv10019780m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 3.7e-11 72.0 101 45.5
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 4.8e-11 71.6 87 51.7
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.8e-11 71.6 122 38.5
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 6.3e-11 71.2 94 47.9
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 6.3e-11 71.2 132 40.9
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 8.2e-11 70.9 78 52.6
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 8.2e-11 70.9 94 47.9
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 1.1e-10 70.5 87 50.6
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 1.1e-10 70.5 87 50.6
BolC8t50655H Brassica oleracea HOM05D007946 ORTHO05D004325 1.4e-10 70.1 122 40.2
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.4e-10 70.1 124 38.7
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 1.8e-10 69.7 107 43.0
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.4e-10 69.3 128 39.8
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.1e-10 68.9 128 39.8
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.3e-10 68.2 97 45.4
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.3e-10 68.2 124 40.3
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.9e-10 67.8 124 37.9
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.9e-10 67.8 128 39.8
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.2e-09 67.0 137 38.0
A09p32530 Brassica napus HOM05D007946 ORTHO05D004325 1.2e-09 67.0 117 37.6
BraA09t38795Z Brassica rapa HOM05D007946 ORTHO05D004325 1.2e-09 67.0 117 37.6
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.2e-09 67.0 88 47.7
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.5e-09 66.6 97 44.3
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 1.5e-09 66.6 101 39.6
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 7.7e-09 64.3 98 44.9
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.9e-08 62.4 130 36.9
BraA09t40264Z Brassica rapa HOM05D007946 ORTHO05D004325 2.9e-08 62.4 117 35.0
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 3.8e-08 62.0 74 45.9
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 3.8e-08 62.0 77 50.6
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.0e-08 61.6 88 43.2
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 6.5e-08 61.2 48 60.4
BcaNung05019 Brassica carinata HOM05D007946 ORTHO05D004325 1.4e-07 60.1 98 38.8
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.4e-07 60.1 81 46.9
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.9e-07 59.7 70 50.0
Aa31LG11G7790 Aethionema arabicum HOM05D006887 ORTHO05D004325 2.5e-07 59.3 75 44.0
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 2.5e-07 59.3 91 41.8
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 2.5e-07 59.3 91 41.8
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 3.2e-07 58.9 91 41.8
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 3.2e-07 58.9 91 41.8
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 3.2e-07 58.9 71 50.7
BcaC07g39832 Brassica carinata HOM05D007946 ORTHO05D004325 4.2e-07 58.5 106 41.5
TPR.G24006 Trifolium pratense HOM05D000307 ORTHO05D000166 4.2e-07 58.5 72 44.4
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 5.5e-07 58.2 91 41.8
BcaC08g43096 Brassica carinata HOM05D007946 ORTHO05D004325 7.2e-07 57.8 96 38.5
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 9.4e-07 57.4 85 43.5
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.4e-07 57.4 77 45.5
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.4e-07 57.4 77 45.5
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.4e-07 57.4 77 45.5
Medtr4g032290 Medicago truncatula HOM05D000307 ORTHO05D000166 1.2e-06 57.0 102 36.3
TPR.G15867 Trifolium pratense HOM05D000307 ORTHO05D000166 1.2e-06 57.0 96 37.5
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 2.1e-06 56.2 86 33.7
Sp1g35560 Schrenkiella parvula HOM05D007946 ORTHO05D004325 2.7e-06 55.8 74 48.6
Ca_15044_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 4.7e-06 55.1 97 36.1
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 6.1e-06 54.7 73 39.7
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 6.1e-06 54.7 89 37.1
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 6.1e-06 54.7 116 37.1
Nitab4.5_0001209g0020 Nicotiana tabacum HOM05D000307 ORTHO05D000166 6.1e-06 54.7 86 38.4
TPR.G15860 Trifolium pratense HOM05D000307 ORTHO05D000166 6.1e-06 54.7 84 38.1
Glyma.18G052800 Glycine max HOM05D000307 ORTHO05D000166 7.9e-06 54.3 114 36.8
THA.LOC104806918 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 7.9e-06 54.3 81 42.0


User provided reference genes

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