Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 4.1e-240 834.3 427 100.0
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 5.8e-218 760.8 424 92.7
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.6e-215 752.7 405 95.1
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 2.7e-215 751.9 405 94.8
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 3.5e-215 751.5 405 94.8
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 5.1e-214 747.7 412 93.7
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 5.6e-213 744.2 407 94.3
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 2.4e-200 702.2 404 87.9
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.1e-197 693.3 408 89.0
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 4.3e-197 691.4 407 88.5
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 9.9e-194 680.2 413 85.0
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 7.4e-189 664.1 407 83.3
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 1.9e-184 649.4 417 76.7
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.4e-184 649.0 415 78.3
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 4.6e-183 644.8 351 86.9
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 1.3e-182 643.3 351 87.2
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 3.9e-182 641.7 407 78.6
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 5.1e-182 641.3 400 78.2
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 8.7e-182 640.6 396 80.3
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 8.7e-182 640.6 400 78.2
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 9.6e-181 637.1 407 77.9
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 9.6e-181 637.1 351 86.3
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.3e-180 636.7 406 79.1
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.4e-179 633.3 415 74.9
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 1.8e-179 632.9 376 81.9
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 1.8e-179 632.9 376 81.9
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 5.3e-179 631.3 351 85.5
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 5.3e-179 631.3 410 79.3
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 5.3e-179 631.3 398 78.4
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 5.3e-179 631.3 356 84.0
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 6.9e-179 630.9 413 76.3
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 9.0e-179 630.6 351 85.2
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.2e-178 630.2 355 85.1
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 3.4e-178 628.6 419 74.2
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 4.5e-178 628.2 351 84.6
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.0e-177 627.1 393 77.9
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 1.0e-177 627.1 415 76.9
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.7e-177 626.3 379 78.9
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 2.2e-177 625.9 351 84.6
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 3.8e-177 625.2 417 76.5
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 1.1e-176 623.6 456 71.5
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.1e-176 623.6 416 77.2
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 2.5e-176 622.5 358 84.4
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.2e-175 620.2 401 76.1
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 3.5e-175 618.6 356 82.3
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.0e-174 617.1 408 74.8
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.0e-174 617.1 373 79.9
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 1.3e-174 616.7 394 75.9
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 2.3e-174 615.9 380 78.2
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 3.9e-174 615.1 422 75.1
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 3.9e-174 615.1 360 82.5
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 5.1e-174 614.8 413 74.3
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 8.7e-174 614.0 424 71.9
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 8.7e-174 614.0 357 81.5
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.5e-173 613.2 360 81.9
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.5e-173 613.2 392 77.3
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 4.3e-173 611.7 358 82.1
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 5.7e-173 611.3 381 78.7
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 5.7e-173 611.3 353 83.3
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 1.6e-172 609.8 360 81.7
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.1e-171 607.1 329 86.3
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 3.1e-171 605.5 376 78.2
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 4.1e-171 605.1 419 72.8
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.5e-170 603.2 422 74.4
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 2.0e-170 602.8 360 80.8
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 3.8e-169 598.6 407 74.2
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.1e-168 597.0 351 82.9
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 1.6e-167 593.2 394 76.6
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 3.6e-167 592.0 353 81.0
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 3.6e-167 592.0 406 73.2
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 7.9e-167 590.9 395 73.9
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 5.1e-166 588.2 392 75.5
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.1e-165 587.0 407 74.0
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.1e-165 587.0 406 74.1
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.1e-165 587.0 397 73.8
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.5e-165 586.6 408 72.5
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.9e-165 586.3 356 80.1
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 3.3e-165 585.5 354 79.9
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 5.7e-165 584.7 418 71.3
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 1.7e-164 583.2 414 71.7
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 4.8e-164 581.6 420 72.1
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 3.1e-163 578.9 357 78.7
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 5.3e-163 578.2 348 80.2
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 1.2e-162 577.0 354 79.4
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 2.0e-162 576.2 358 77.9
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 2.0e-162 576.2 410 72.0
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 2.6e-162 575.9 337 82.5
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 7.7e-162 574.3 435 69.4
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 2.2e-161 572.8 450 64.7
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 8.5e-161 570.9 354 78.5
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 8.5e-161 570.9 343 81.0
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 1.1e-160 570.5 328 82.6
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 1.2e-159 567.0 366 76.2
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.6e-159 566.6 343 77.8
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 2.7e-159 565.8 423 68.8
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.5e-157 560.1 353 78.2
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.0e-157 559.7 327 81.7
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.0e-157 559.7 327 81.7
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 3.2e-152 542.3 335 79.7
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 7.2e-152 541.2 497 59.8
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.1e-149 533.9 333 78.7
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 4.4e-149 531.9 356 71.6
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 3.7e-148 528.9 357 73.1
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.7e-145 520.0 531 55.0
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 5.0e-145 518.5 357 72.0
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 3.2e-144 515.8 413 65.1
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 3.0e-142 509.2 563 52.2
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 1.3e-132 477.2 483 55.5
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.6e-122 443.7 392 57.9
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 4.0e-118 429.1 329 66.9
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.6e-114 417.2 435 56.1
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 4.4e-109 399.1 360 54.2
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.4e-107 394.0 209 87.6
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.9e-107 393.7 203 92.1
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 3.2e-107 392.9 349 57.3
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 1.2e-77 294.7 298 49.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.9e-59 234.2 348 37.6
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 1.1e-56 224.9 114 90.4
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.3e-56 223.0 122 83.6
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.5e-53 214.5 181 65.7
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 3.4e-45 186.8 211 55.0
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 4.7e-42 176.4 111 76.6
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 5.0e-36 156.4 103 75.7
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 7.4e-32 142.5 69 92.8
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 3.2e-27 127.1 85 72.9
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 4.7e-26 123.2 84 71.4
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 8.0e-26 122.5 73 82.2
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 3.4e-24 117.1 80 73.8
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 6.5e-20 102.8 53 86.8
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.6e-16 90.9 43 95.3
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 2.3e-12 77.8 62 64.5
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.2e-11 73.6 43 79.1
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 1.0e-09 68.9 70 55.7
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.8e-09 68.2 38 76.3
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.6e-08 64.3 62 48.4
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 6.3e-07 59.7 44 59.1


User provided reference genes

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