Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 7.9e-211 736.9 376 100.0
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 2.9e-197 691.8 374 93.0
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 4.4e-177 624.8 372 84.1
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 1.3e-176 623.2 372 81.2
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 3.5e-174 615.1 372 80.4
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 3.5e-174 615.1 372 80.4
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.0e-173 613.6 372 80.6
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-173 613.2 372 80.9
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 2.2e-173 612.5 372 80.4
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 6.5e-173 610.9 372 79.8
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 6.5e-173 610.9 372 79.8
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 8.5e-173 610.5 372 79.8
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 1.9e-172 609.4 372 80.1
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 1.9e-172 609.4 372 79.6
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 1.9e-172 609.4 372 79.6
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 2.1e-171 605.9 372 79.8
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 5.7e-169 597.8 398 75.1
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 4.5e-166 588.2 375 77.9
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 3.8e-165 585.1 374 78.3
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 5.0e-165 584.7 404 73.5
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 6.1e-155 551.2 373 72.1
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 4.4e-153 545.0 376 73.4
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 9.8e-153 543.9 373 73.2
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.1e-151 540.4 373 73.2
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 2.4e-151 539.3 374 72.7
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 4.1e-151 538.5 373 72.9
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 9.1e-151 537.3 371 70.9
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 1.2e-150 537.0 376 70.5
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 2.0e-150 536.2 372 69.4
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 2.0e-150 536.2 373 72.9
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 3.5e-150 535.4 374 71.9
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 7.7e-150 534.3 372 69.6
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 7.7e-150 534.3 372 70.2
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.0e-149 533.9 370 71.4
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 2.3e-149 532.7 373 71.0
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 5.0e-149 531.6 373 71.6
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.5e-148 530.0 372 71.5
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 2.5e-148 529.3 372 69.1
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 3.3e-148 528.9 380 69.7
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.2e-148 528.5 372 72.8
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 1.2e-147 526.9 372 71.0
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 1.2e-147 526.9 376 70.5
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 1.6e-147 526.6 372 70.2
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 2.1e-147 526.2 373 69.7
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 2.1e-147 526.2 378 71.2
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.8e-147 525.8 375 69.3
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 3.6e-147 525.4 376 71.5
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 4.7e-147 525.0 372 70.7
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 6.1e-147 524.6 373 70.5
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 3.0e-146 522.3 372 69.1
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.5e-145 520.0 372 70.7
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.5e-145 520.0 372 68.0
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 5.7e-145 518.1 372 67.7
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 1.3e-144 516.9 372 67.7
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.3e-144 516.9 372 67.7
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.3e-144 516.9 372 67.7
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 1.7e-144 516.5 372 68.0
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.2e-144 516.2 374 70.9
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.4e-143 512.7 373 69.7
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 4.1e-143 511.9 376 68.4
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 1.2e-142 510.4 373 69.2
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 6.6e-141 504.6 375 66.7
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 1.5e-140 503.4 376 66.8
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.9e-140 503.1 372 68.3
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 2.5e-140 502.7 358 69.6
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 4.3e-140 501.9 376 67.8
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 5.6e-140 501.5 376 67.6
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.2e-139 500.4 376 67.3
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 1.6e-139 500.0 356 71.6
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.6e-139 500.0 372 65.6
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 1.0e-138 497.3 376 66.2
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 1.4e-138 496.9 373 67.8
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.3e-138 496.1 374 68.4
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.3e-138 496.1 374 68.4
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 4.0e-138 495.4 374 67.1
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 5.2e-138 495.0 378 67.7
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 5.2e-138 495.0 374 67.9
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 6.8e-138 494.6 374 67.4
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 8.9e-138 494.2 379 68.1
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 1.5e-137 493.4 378 67.7
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 2.0e-137 493.0 374 68.2
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 2.6e-137 492.7 376 65.4
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 2.6e-137 492.7 374 66.8
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 2.6e-137 492.7 374 67.1
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 5.8e-137 491.5 372 67.7
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 7.5e-137 491.1 374 68.2
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 7.5e-137 491.1 374 68.2
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 9.8e-137 490.7 390 66.2
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 9.8e-137 490.7 376 65.2
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 3.7e-136 488.8 377 66.6
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 6.4e-136 488.0 375 62.1
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.1e-135 487.3 376 64.6
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 5.6e-132 474.9 367 66.5
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 9.5e-132 474.2 374 64.4
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 1.6e-131 473.4 369 64.5
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 6.2e-131 471.5 373 62.5
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 8.1e-131 471.1 381 63.5
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 2.3e-130 469.5 369 63.4
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 1.5e-129 466.8 369 63.4
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 2.6e-129 466.1 387 61.5
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 4.4e-129 465.3 374 64.2
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 1.7e-128 463.4 373 60.3
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 2.2e-128 463.0 453 56.5
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 4.9e-128 461.8 374 63.1
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 8.3e-128 461.1 354 65.3
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.5e-124 450.3 374 62.6
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 1.9e-124 449.9 374 61.5
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 3.6e-123 445.7 402 58.5
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 5.2e-122 441.8 396 60.4
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.9e-121 437.6 371 59.8
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.2e-118 430.6 376 59.8
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 2.3e-117 426.4 372 58.1
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 3.9e-117 425.6 372 60.2
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 1.8e-114 416.8 374 59.9
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 1.3e-112 410.6 379 55.1
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 2.2e-112 409.8 374 58.3
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.9e-111 406.8 310 68.4
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 3.9e-109 399.1 401 53.1
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 3.1e-106 389.4 303 63.0
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 5.8e-105 385.2 299 64.2
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.5e-102 375.9 377 55.4
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 1.1e-98 364.4 374 50.3
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 4.2e-95 352.4 380 50.8
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.9e-88 329.7 375 50.7
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 3.3e-84 316.2 255 62.7
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 1.1e-79 301.2 246 64.2
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 1.3e-75 287.7 231 62.3
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 2.4e-74 283.5 377 43.8
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.0e-72 278.1 161 82.6
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 8.5e-72 275.0 464 37.3
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 1.9e-71 273.9 249 53.8
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 3.9e-69 266.2 376 40.7
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 2.5e-68 263.5 183 74.3
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.6e-62 244.2 197 63.5
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.2e-57 228.0 257 51.0
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 1.2e-57 228.0 197 59.9
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 6.1e-54 215.7 167 64.1
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 9.7e-52 208.4 372 37.1
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.1e-50 204.9 205 56.1
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.1e-47 194.9 142 71.1
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-47 194.5 214 51.9
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.0e-45 186.8 165 58.2
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.0e-41 174.1 164 55.5
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 8.5e-40 168.7 406 32.3
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-38 164.9 131 64.1
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 6.8e-37 159.1 116 68.1
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.8e-37 159.1 142 59.9
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.7e-36 156.0 142 57.7
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.0e-32 145.2 142 55.6
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.6e-32 142.5 237 40.1
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 8.6e-32 142.1 116 62.9
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-28 131.7 189 42.9
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 5.7e-28 129.4 86 73.3
EL10Ac2g02713 Beta vulgaris HOM05D003501 ORTHO05D004388 2.2e-27 127.5 101 63.4
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 2.2e-27 127.5 261 36.0
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.7e-27 126.7 86 70.9
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.4e-27 125.9 86 72.1
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-25 121.7 133 52.6
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.6e-24 115.5 260 34.6
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 5.8e-20 102.8 70 71.4
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.0e-18 95.9 178 38.2
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-17 95.1 75 58.7
AL1G16300 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 4.6e-17 93.2 99 51.5
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 7.8e-17 92.4 91 56.0
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.8e-17 92.4 95 53.7
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 1.3e-16 91.7 70 70.0
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 1.3e-16 91.7 70 65.7
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.3e-16 90.9 253 31.6
EL10Ac4g08784 Beta vulgaris HOM05D003501 ORTHO05D004388 3.0e-16 90.5 141 41.1
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.6e-16 89.0 95 49.5
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.3e-15 87.0 70 61.4
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.5e-15 85.5 95 49.5
Actinidia15651 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.2e-14 85.1 67 64.2
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.1e-14 84.3 70 60.0
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.4e-13 81.6 86 54.7
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 9.8e-12 75.5 57 66.7
Lsat_1_v5_gn_6_85780 Lactuca sativa HOM05D003501 ORTHO05D004388 9.8e-12 75.5 68 58.8
Lsat_1_v5_gn_2_114700 Lactuca sativa HOM05D003501 ORTHO05D004388 4.9e-11 73.2 66 60.6
QL93p1877_0036 Quercus lobata HOM05D003501 ORTHO05D004388 7.1e-10 69.3 48 66.7
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.2e-10 68.9 86 43.0
HPP92_027916 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.6e-09 68.2 53 64.2
SEGI_12129 Sequoiadendron giganteum HOM05D003501 ORTHO05D004388 2.7e-09 67.4 67 47.8
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.8e-09 65.9 84 41.7
SMO364G0656 Selaginella moellendorffii HOM05D003501 ORTHO05D018303 8.6e-08 62.4 181 25.4
AagrBONN_evm.TU.Sc2ySwM_117.3442 Anthoceros agrestis HOM05D003501 ORTHO05D018303 1.6e-06 58.2 195 24.1


User provided reference genes

Program Settings