Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 5.8e-167 590.9 313 100.0
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 3.3e-154 548.5 314 89.2
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 9.3e-149 530.4 316 85.1
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 8.4e-142 507.3 314 82.2
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 8.4e-142 507.3 314 82.2
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 2.1e-140 502.7 314 84.4
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.8e-139 499.6 315 79.4
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.8e-139 499.6 315 79.4
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 3.9e-139 498.4 264 91.3
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 6.7e-139 497.7 316 78.8
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 1.5e-138 496.5 314 83.1
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 2.5e-138 495.7 316 78.5
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 5.7e-138 494.6 314 85.4
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 3.7e-137 491.9 312 81.7
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 8.2e-137 490.7 314 80.3
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 4.5e-135 485.0 264 88.6
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 2.2e-134 482.6 314 83.8
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 3.6e-132 475.3 318 74.2
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 1.0e-115 420.6 318 66.7
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 2.7e-103 379.4 324 63.3
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 4.2e-101 372.1 266 68.0
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 3.6e-100 369.0 324 59.6
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.2e-97 359.8 322 57.5
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 4.8e-97 358.6 323 58.8
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 6.3e-97 358.2 270 66.3
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 2.4e-96 356.3 320 58.1
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 2.4e-96 356.3 316 58.5
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 5.4e-96 355.1 314 58.3
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 9.1e-96 354.4 317 56.8
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.0e-95 353.2 316 56.3
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.7e-95 352.8 317 56.5
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 7.7e-95 351.3 327 60.6
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.3e-94 350.5 308 57.1
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.7e-94 350.1 327 60.2
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.7e-94 350.1 314 57.6
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.7e-94 350.1 327 57.5
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 5.0e-94 348.6 295 61.4
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 8.6e-94 347.8 314 56.4
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.5e-93 347.1 268 61.6
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.9e-93 346.7 319 60.5
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.9e-93 346.7 312 60.3
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 2.5e-93 346.3 321 57.0
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 4.2e-93 345.5 314 59.9
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.2e-92 344.0 314 58.3
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 1.6e-92 343.6 319 54.2
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 4.7e-92 342.0 379 49.3
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 6.1e-92 341.7 236 68.6
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 1.0e-91 340.9 315 58.1
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.8e-91 340.1 321 55.8
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.8e-91 340.1 316 59.2
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.8e-91 340.1 330 56.4
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 2.3e-91 339.7 308 57.5
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 8.9e-91 337.8 315 58.7
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 8.9e-91 337.8 315 58.7
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 1.2e-90 337.4 313 55.3
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 2.6e-90 336.3 262 62.6
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 4.4e-90 335.5 308 54.9
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 5.7e-90 335.1 305 55.1
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 7.5e-90 334.7 312 56.7
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 7.5e-90 334.7 269 62.5
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.7e-89 333.6 261 65.1
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 2.2e-89 333.2 260 61.2
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 2.8e-89 332.8 312 55.1
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 4.9e-89 332.0 310 57.1
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.4e-88 329.7 262 62.2
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 2.4e-88 329.7 313 55.9
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 3.1e-88 329.3 323 58.2
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 3.1e-88 329.3 248 61.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 4.1e-88 328.9 316 54.4
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.1e-88 328.9 329 53.8
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 5.4e-88 328.6 317 56.2
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.2e-87 327.4 315 57.5
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 1.2e-87 327.4 313 55.3
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 2.0e-87 326.6 266 58.6
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.0e-87 326.6 311 55.3
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 5.9e-87 325.1 319 53.6
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 7.8e-87 324.7 314 54.5
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 7.8e-87 324.7 255 62.0
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.7e-86 323.6 316 54.1
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.3e-86 323.2 262 61.8
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 2.9e-86 322.8 245 62.0
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 3.8e-86 322.4 268 58.2
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.5e-85 320.5 267 57.3
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.9e-85 320.1 267 58.8
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 7.3e-85 318.2 318 53.8
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 9.5e-85 317.8 259 61.0
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 9.5e-85 317.8 267 56.9
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 6.1e-84 315.1 211 70.6
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 4.0e-83 312.4 234 65.0
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 5.2e-83 312.0 286 55.6
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 6.8e-83 311.6 315 52.1
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.2e-82 310.8 256 59.8
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.5e-82 310.5 264 57.2
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.5e-82 310.5 264 57.2
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 2.6e-82 309.7 258 58.1
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 2.6e-82 309.7 268 56.7
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 4.4e-82 308.9 347 47.6
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 7.5e-82 308.1 269 56.1
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 2.9e-81 306.2 321 50.8
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 4.9e-81 305.4 238 68.5
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 4.9e-81 305.4 238 68.5
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 2.4e-80 303.1 233 59.2
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.0e-78 297.7 256 57.4
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.3e-78 297.4 319 50.8
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 5.0e-78 295.4 240 66.7
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 8.6e-78 294.7 320 51.2
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 5.6e-77 292.0 214 66.4
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 3.1e-75 286.2 278 54.7
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 3.1e-75 286.2 243 64.6
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.0e-74 283.5 210 68.1
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.6e-74 283.1 219 64.4
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 3.0e-70 269.6 277 52.7
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 8.1e-68 261.5 318 46.2
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 8.6e-62 241.5 260 53.1
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.9e-61 240.4 215 53.5
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 1.3e-54 217.6 303 41.9
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 5.6e-53 212.2 269 43.5
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 5.4e-48 195.7 205 53.2
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 6.6e-46 188.7 223 48.4
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 6.6e-46 188.7 308 37.3
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 7.3e-45 185.3 224 41.5
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 7.6e-42 175.3 132 60.6
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.9e-40 170.6 216 46.8
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.1e-37 161.4 162 54.3
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.5e-37 160.2 221 36.7
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 9.6e-37 158.3 233 41.2
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 2.8e-36 156.8 196 42.9
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 6.2e-36 155.6 189 47.6
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 1.4e-35 154.5 208 45.7
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 7.6e-34 148.7 201 42.3
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 2.9e-33 146.7 122 58.2
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 4.6e-31 139.4 94 71.3
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 5.3e-27 125.9 162 46.3
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 4.9e-25 119.4 261 31.4
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.5e-21 107.8 78 59.0
CARHR258970 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.0e-18 97.4 49 85.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.6e-15 87.8 194 27.3
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 2.2e-09 67.4 191 27.2
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 7.2e-08 62.4 43 60.5
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.1e-07 60.8 51 56.9


User provided reference genes

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