Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 0.0e+00 1180.6 600 100.0
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 0.0e+00 1159.4 600 97.8
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 0.0e+00 1091.6 590 94.1
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 0.0e+00 1088.9 600 92.7
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 0.0e+00 1088.6 607 90.8
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 0.0e+00 1080.1 625 88.2
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 0.0e+00 1075.8 624 88.1
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 4.1e-312 1074.7 629 88.2
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 6.2e-311 1070.1 600 91.0
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 9.3e-307 1056.2 610 88.0
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 4.6e-306 1053.9 600 90.2
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 1.3e-305 1052.4 610 87.9
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 6.3e-295 1016.9 619 85.0
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 1.1e-291 1006.1 604 85.6
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 5.0e-268 927.5 604 78.6
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 3.4e-264 914.8 603 76.3
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 1.7e-263 912.5 602 76.1
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 3.7e-263 911.4 603 76.0
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 3.7e-263 911.4 603 76.0
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 9.2e-262 906.7 599 77.1
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 1.7e-260 902.5 615 75.9
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 1.9e-259 899.0 596 75.7
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 2.5e-259 898.7 596 75.7
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 9.5e-259 896.7 607 75.5
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 2.1e-258 895.6 589 77.6
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 2.8e-258 895.2 612 75.2
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 3.6e-258 894.8 605 75.7
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 8.0e-258 893.6 605 75.5
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 2.3e-257 892.1 589 77.2
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 4.0e-257 891.3 588 76.7
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 4.4e-256 887.9 603 73.8
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 5.7e-256 887.5 589 76.7
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 1.3e-255 886.3 603 75.0
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 2.9e-255 885.2 604 73.7
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 8.3e-255 883.6 600 74.5
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 4.1e-254 881.3 600 74.2
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 5.4e-254 880.9 608 73.5
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 7.0e-254 880.6 604 73.5
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 3.5e-253 878.2 600 74.2
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 1.0e-252 876.7 605 74.0
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 1.0e-252 876.7 589 75.6
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 3.0e-252 875.2 611 73.3
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 6.6e-252 874.0 603 73.8
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 1.1e-251 873.2 585 75.4
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 1.9e-251 872.5 526 81.4
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 4.3e-251 871.3 600 73.5
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 5.6e-251 870.9 605 74.2
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 2.1e-250 869.0 600 73.3
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 3.6e-250 868.2 596 73.7
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 5.2e-249 864.4 595 74.3
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 6.8e-249 864.0 637 70.3
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.3e-247 859.8 602 72.3
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 1.3e-247 859.8 596 72.5
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 1.7e-247 859.4 598 74.4
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 8.3e-247 857.1 588 74.8
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 1.1e-246 856.7 614 72.3
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 9.2e-246 853.6 597 72.0
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 1.6e-245 852.8 589 73.9
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 2.0e-245 852.4 526 80.2
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 1.0e-244 850.1 589 73.5
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 3.0e-244 848.6 595 72.6
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 1.5e-243 846.3 603 70.6
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 1.9e-243 845.9 604 71.0
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 4.3e-243 844.7 587 73.9
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 2.8e-242 842.0 598 73.2
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.8e-241 839.3 535 77.0
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 5.8e-240 834.3 601 71.4
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 2.9e-239 832.0 541 76.2
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 6.4e-239 830.9 601 71.2
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 3.6e-234 815.1 514 77.8
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 1.1e-233 813.5 582 72.0
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 1.4e-233 813.1 591 70.7
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 9.9e-232 807.0 571 72.9
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 2.2e-231 805.8 588 71.1
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 4.9e-231 804.7 608 69.9
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 8.4e-231 803.9 775 58.3
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 4.1e-230 801.6 587 70.5
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 5.4e-230 801.2 588 70.6
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 1.6e-229 799.7 634 67.4
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 3.3e-227 792.0 685 62.8
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 7.8e-221 770.8 582 68.0
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 4.3e-219 765.0 578 67.5
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.4e-217 760.0 559 69.4
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 2.4e-217 759.2 603 66.5
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 2.7e-213 745.7 522 72.6
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 1.0e-212 743.8 614 65.3
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 2.8e-210 735.7 494 75.1
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 6.7e-204 714.5 655 60.6
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 1.6e-202 709.9 734 55.0
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 8.2e-202 707.6 574 64.3
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 1.0e-199 700.7 527 66.2
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 2.9e-199 699.1 606 60.4
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 1.9e-198 696.4 451 78.0
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.3e-194 683.7 593 60.7
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 5.9e-192 674.9 603 61.7
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 5.0e-191 671.8 564 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 4.6e-189 665.2 572 61.7
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 2.7e-181 639.4 443 72.9
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.2e-176 624.0 454 70.3
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 2.0e-152 543.5 389 70.2
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 1.3e-138 497.7 377 66.8
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 3.2e-129 466.5 270 81.5
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 4.6e-128 462.6 326 71.8
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 9.5e-126 454.9 290 80.3
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 5.4e-121 439.1 312 71.5
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 1.6e-120 437.6 566 45.2
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 4.8e-101 372.9 388 55.9
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 1.4e-92 344.7 246 72.0
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 2.6e-91 340.5 262 69.1
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 1.3e-90 338.2 188 86.2
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 6.9e-84 315.8 210 71.4
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 1.1e-73 282.0 448 37.5
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 2.9e-66 257.3 217 63.6
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 2.8e-61 240.7 175 70.3
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.6e-51 208.4 360 38.6
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 2.9e-50 204.1 108 84.3
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 1.0e-47 195.7 136 72.8
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 3.1e-44 184.1 178 60.1
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.5e-41 175.3 140 65.0
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.4e-36 157.9 103 68.0
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 1.7e-29 135.2 134 60.4
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.1e-25 122.5 181 44.8
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 2.1e-24 118.2 267 31.8
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 2.1e-24 118.2 66 75.8
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 1.5e-22 112.1 164 45.7
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 5.8e-06 57.0 43 76.7


User provided reference genes

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