Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 0.0e+00 1559.7 909 100.0
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 0.0e+00 1412.9 917 89.4
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 0.0e+00 1342.8 921 84.7
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 0.0e+00 1265.4 923 77.2
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 0.0e+00 1202.2 927 73.0
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 0.0e+00 1186.8 923 78.5
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1185.6 922 75.5
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1185.6 922 75.5
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1177.5 930 73.7
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1172.1 923 74.9
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 0.0e+00 1169.5 920 75.1
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1162.5 925 74.5
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1151.7 914 72.5
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1148.7 914 77.9
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1142.5 913 74.3
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1132.9 914 77.1
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1087.0 916 71.2
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 0.0e+00 1084.3 926 65.6
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.5e-231 807.0 952 52.7
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 2.3e-224 783.1 975 51.2
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 6.7e-224 781.6 885 52.5
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 2.4e-221 773.1 937 50.2
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 4.1e-221 772.3 937 51.1
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 1.2e-220 770.8 967 49.7
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 2.6e-220 769.6 863 52.0
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 2.6e-220 769.6 963 49.4
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 5.9e-220 768.5 940 50.1
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.3e-219 767.3 937 50.1
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.6e-217 760.4 950 50.3
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 4.7e-217 758.8 952 49.3
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 2.3e-216 756.5 904 50.2
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 2.0e-212 743.4 895 50.5
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 1.7e-211 740.3 941 49.4
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 6.5e-211 738.4 923 49.5
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 3.6e-209 732.6 903 50.2
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 4.4e-207 725.7 831 52.1
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 7.5e-207 724.9 883 50.3
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.8e-205 720.3 945 47.4
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 2.4e-205 719.9 947 47.6
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.1e-205 719.2 942 48.5
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 5.4e-205 718.8 950 48.1
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 5.4e-205 718.8 946 47.6
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 7.0e-205 718.4 951 47.6
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 9.1e-205 718.0 862 50.0
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.6e-204 717.2 884 49.8
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 2.7e-204 716.5 869 49.5
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 2.7e-204 716.5 954 48.1
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 5.9e-204 715.3 948 47.3
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 2.3e-203 713.4 840 50.0
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 2.3e-203 713.4 933 50.2
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 2.9e-203 713.0 963 47.2
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.9e-202 710.3 854 49.8
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.1e-201 706.8 854 48.8
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 4.0e-200 702.6 855 50.4
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 6.8e-200 701.8 902 48.2
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.1e-197 694.5 867 49.7
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.1e-197 694.5 897 47.8
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 4.5e-196 689.1 970 45.7
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.7e-195 687.2 853 49.7
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 3.8e-195 686.0 942 47.0
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 2.5e-194 683.3 949 47.1
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 4.3e-194 682.6 925 46.4
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.8e-192 677.2 862 48.7
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.8e-192 677.2 941 46.2
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 8.9e-192 674.9 937 47.6
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 2.6e-191 673.3 934 46.6
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 4.4e-191 672.5 959 46.8
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.3e-190 671.0 863 48.0
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 2.2e-190 670.2 888 47.4
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 6.4e-190 668.7 871 48.3
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.4e-189 667.5 941 46.5
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.9e-189 667.2 927 46.0
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 3.2e-189 666.4 853 48.9
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 3.2e-189 666.4 936 46.2
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 3.0e-187 659.8 944 46.5
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 9.5e-186 654.8 900 47.7
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 1.2e-185 654.4 943 45.4
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 3.6e-185 652.9 881 47.0
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 4.0e-184 649.4 887 47.0
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 3.4e-183 646.4 942 45.5
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 4.4e-183 646.0 949 46.2
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 5.8e-183 645.6 864 46.8
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 7.5e-183 645.2 972 44.9
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.2e-180 637.9 886 45.4
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.0e-179 634.8 892 45.0
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 1.3e-179 634.4 855 46.8
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.3e-179 634.4 884 44.9
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.7e-179 634.0 795 47.5
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 6.6e-179 632.1 1000 43.3
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 8.6e-179 631.7 897 46.8
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 8.6e-179 631.7 944 44.1
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.9e-178 630.6 978 43.6
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 1.4e-176 624.4 944 44.7
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 4.4e-175 619.4 788 48.6
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 4.1e-173 612.8 775 47.4
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 3.5e-172 609.8 982 41.6
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 5.6e-170 602.4 956 42.2
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 7.6e-167 592.0 954 43.3
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 2.9e-166 590.1 936 42.6
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 5.1e-163 579.3 976 42.3
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 2.5e-162 577.0 949 41.5
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 9.0e-152 542.0 822 41.1
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.3e-150 538.1 716 48.3
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 2.4e-149 533.9 582 50.5
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 2.6e-143 513.8 985 37.1
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 4.2e-141 506.5 988 37.3
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 8.7e-139 498.8 917 37.8
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.1e-133 481.9 485 54.0
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 3.2e-133 480.3 917 38.1
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 2.3e-131 474.2 894 40.9
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.0e-126 458.8 477 52.4
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.2e-125 453.4 490 51.4
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 3.1e-120 437.2 1001 34.6
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 1.0e-115 422.2 841 36.6
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.7e-105 387.1 263 79.8
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 6.3e-105 386.3 275 75.6
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.2e-87 328.9 550 41.1
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 5.9e-87 326.6 526 38.6
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.6e-76 290.8 482 39.6
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 1.8e-59 235.3 484 40.5
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 5.4e-56 223.8 294 45.2
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 7.1e-56 223.4 364 44.0
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 9.2e-56 223.0 417 44.6
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.5e-55 221.1 170 66.5
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 4.6e-55 220.7 400 35.8
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 8.6e-54 216.5 364 44.8
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 9.6e-53 213.0 388 36.6
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 6.2e-52 210.3 528 30.3
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 8.4e-49 199.9 168 58.9
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.1e-47 195.3 430 39.3
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 1.3e-44 186.0 584 26.2
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 4.8e-44 184.1 416 39.9
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 3.8e-41 174.5 422 32.0
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.7e-31 141.7 88 85.2
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 5.1e-30 137.5 95 67.4
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 2.1e-23 115.5 77 74.0
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.3e-21 107.8 111 55.9
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.3e-20 106.3 111 55.9
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.9e-17 95.1 84 51.2
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 8.4e-17 93.6 129 47.3
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 1.1e-13 83.2 65 64.6
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 6.9e-11 73.9 160 33.1
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 9.0e-11 73.6 90 46.7
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.5e-10 72.8 90 50.0
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 7.9e-07 60.5 40 60.0
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.0e-06 58.5 110 41.8


User provided reference genes

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