Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 7.7e-214 746.9 383 100.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 8.9e-210 733.4 383 98.2
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 4.1e-207 724.5 383 96.6
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.6e-203 712.6 383 94.3
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 2.9e-200 701.8 383 92.7
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 7.0e-199 697.2 383 92.7
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 4.6e-198 694.5 383 92.2
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 4.6e-198 694.5 383 92.2
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.9e-196 689.1 383 91.9
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.2e-195 686.4 383 91.6
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.1e-195 685.6 383 91.4
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 3.7e-192 674.9 384 90.1
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 3.2e-191 671.8 384 89.8
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 3.5e-190 668.3 384 89.1
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 4.3e-188 661.4 384 88.8
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.6e-187 659.4 386 88.9
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 8.1e-187 657.1 385 88.6
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 8.1e-187 657.1 385 88.6
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 2.3e-186 655.6 384 88.3
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 2.3e-186 655.6 384 88.3
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 8.3e-184 647.1 383 87.2
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 2.4e-178 629.0 381 83.2
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.9e-175 619.4 384 84.4
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 1.1e-162 577.0 375 78.7
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 5.4e-159 564.7 386 77.7
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 2.7e-158 562.4 383 77.0
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 2.3e-157 559.3 374 77.0
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 8.7e-157 557.4 383 76.2
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.5e-156 556.6 395 75.4
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 2.5e-156 555.8 386 75.4
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 3.3e-156 555.4 354 79.7
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 5.6e-156 554.7 384 76.0
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.3e-155 553.5 360 78.6
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.6e-155 553.1 357 78.7
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.6e-155 553.1 378 75.9
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.6e-155 553.1 378 75.9
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 4.8e-155 551.6 385 75.3
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 4.0e-154 548.5 359 76.9
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 5.3e-154 548.1 383 75.2
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 5.3e-154 548.1 357 79.8
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 6.9e-154 547.7 380 75.5
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 3.4e-153 545.4 371 76.3
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.5e-153 545.0 381 75.3
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.8e-153 544.7 356 79.8
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 7.6e-153 544.3 374 75.7
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.3e-152 543.5 382 74.6
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.3e-152 543.5 354 79.4
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.3e-152 543.5 374 75.1
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.9e-152 541.6 355 78.6
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 4.9e-152 541.6 358 77.1
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.1e-151 540.4 354 78.0
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.4e-151 540.0 324 82.7
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.9e-151 539.7 382 73.8
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.9e-151 539.7 374 74.3
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.9e-151 539.7 355 78.6
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.9e-151 539.7 342 80.7
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.2e-151 538.9 383 74.7
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.2e-151 538.5 368 75.8
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 5.5e-151 538.1 386 72.0
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 5.5e-151 538.1 324 83.0
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 7.1e-151 537.7 358 78.5
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 7.1e-151 537.7 380 74.5
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 7.1e-151 537.7 354 77.7
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 9.3e-151 537.3 356 77.5
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.2e-150 537.0 358 77.1
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.1e-150 536.2 348 79.9
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.1e-150 536.2 378 75.4
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 2.1e-150 536.2 371 76.8
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 3.5e-150 535.4 346 78.0
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 3.5e-150 535.4 353 76.8
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 6.0e-150 534.6 358 76.8
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.0e-150 534.6 363 76.9
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.0e-149 533.9 358 77.7
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.3e-149 533.5 356 77.0
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.3e-149 532.7 355 75.8
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.3e-149 532.7 324 81.8
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.3e-149 532.7 358 77.4
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.0e-149 532.3 355 77.7
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 3.9e-149 531.9 357 76.5
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.1e-149 531.6 363 76.3
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 6.7e-149 531.2 339 79.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 6.7e-149 531.2 369 74.5
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 6.7e-149 531.2 356 76.7
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 8.7e-149 530.8 351 78.1
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 8.7e-149 530.8 352 76.7
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 8.7e-149 530.8 352 76.7
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.1e-148 530.4 358 77.1
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.1e-148 530.4 399 70.4
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.9e-148 529.6 368 74.2
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.9e-148 529.6 368 74.2
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 9.6e-148 527.3 344 77.0
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.6e-147 526.6 348 78.7
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.1e-147 526.2 356 75.8
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 6.2e-147 524.6 364 73.9
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 6.2e-147 524.6 353 75.6
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 8.2e-147 524.2 367 74.1
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 8.2e-147 524.2 343 78.4
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.2e-147 524.2 353 77.1
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 8.2e-147 524.2 385 71.7
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.8e-146 523.1 352 77.6
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.8e-146 523.1 350 76.0
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.4e-146 522.7 364 74.2
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.2e-145 520.4 376 72.9
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.6e-145 519.2 353 76.5
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.4e-145 518.8 365 73.7
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.4e-145 518.8 365 73.7
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 7.6e-145 517.7 355 76.1
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.7e-144 516.5 365 73.4
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.0e-144 515.0 356 73.9
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.1e-143 513.8 358 74.3
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 3.2e-143 512.3 352 76.1
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.2e-142 510.4 347 76.1
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.5e-142 508.8 317 81.1
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.5e-142 508.8 301 83.4
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.0e-141 507.3 459 62.3
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.3e-141 506.1 348 74.1
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.9e-141 505.4 352 73.9
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 6.7e-141 504.6 332 76.8
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 8.7e-141 504.2 355 73.5
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.1e-140 503.8 358 72.9
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.9e-140 503.1 351 74.1
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.5e-140 502.7 355 73.5
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 3.3e-140 502.3 330 77.6
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 5.7e-140 501.5 357 74.5
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 7.4e-140 501.1 442 63.1
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 1.6e-139 500.0 383 69.5
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.7e-139 498.8 391 67.3
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.8e-138 496.5 321 78.5
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 5.3e-138 495.0 345 73.0
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 9.0e-138 494.2 364 70.3
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.0e-137 493.0 369 69.4
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-136 490.3 284 86.6
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.9e-136 489.2 321 77.3
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.9e-136 489.2 447 61.3
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.1e-135 487.3 284 84.9
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 2.3e-133 479.6 384 65.9
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 3.9e-133 478.8 323 74.6
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.5e-132 476.9 348 71.0
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 2.5e-132 476.1 332 71.7
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.8e-131 472.6 348 71.0
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.8e-131 472.6 321 74.1
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.1e-130 470.7 316 75.6
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 7.7e-129 464.5 299 77.3
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 1.3e-128 463.8 319 75.2
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.4e-127 460.3 299 75.9
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.6e-126 456.8 338 69.2
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.1e-122 444.1 309 74.8
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 9.1e-114 414.5 311 68.5
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 3.0e-109 399.4 322 64.3
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 2.0e-105 386.7 246 79.7
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 6.5e-104 381.7 260 76.9
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.3e-101 373.2 268 75.7
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.8e-93 347.1 290 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 9.8e-92 341.3 247 73.3
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.6e-73 280.8 310 54.5
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 3.3e-71 273.1 308 51.0
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 9.9e-68 261.5 195 71.3
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 4.1e-66 256.1 190 72.1
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.7e-65 253.4 228 66.2
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 3.1e-61 240.0 205 61.0
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 4.9e-59 232.6 228 62.3
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 4.9e-59 232.6 228 62.3
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 3.0e-48 196.8 112 81.2
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 1.1e-42 178.3 113 78.8
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.5e-39 167.9 104 79.8
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 9.6e-39 165.2 102 81.4
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 9.6e-39 165.2 102 81.4
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 6.2e-38 162.5 102 80.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 5.3e-37 159.5 106 76.4
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 2.6e-36 157.1 98 79.6
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.7e-35 154.5 107 72.0
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 2.5e-34 150.6 106 71.7
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 4.3e-31 139.8 284 33.8
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 5.3e-21 106.3 64 79.7
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.6e-17 93.6 67 74.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.3e-16 90.9 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 6.3e-14 82.8 61 73.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.5e-12 76.6 38 92.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 5.0e-11 73.2 38 89.5


User provided reference genes

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