Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 0.0e+00 1404.8 711 100.0
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 0.0e+00 1284.2 707 92.1
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 0.0e+00 1240.3 710 87.9
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 0.0e+00 1190.3 713 84.3
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 0.0e+00 1187.9 736 81.7
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 0.0e+00 1177.2 692 85.8
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 0.0e+00 1095.9 687 80.5
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 0.0e+00 1094.3 706 78.9
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 0.0e+00 1091.6 706 78.9
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 0.0e+00 1091.6 693 79.8
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 0.0e+00 1085.9 686 79.3
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.2e-305 1052.7 713 76.7
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 9.4e-298 1026.5 701 73.2
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 1.9e-250 869.4 733 61.4
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 2.5e-250 869.0 718 62.7
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 1.1e-248 863.6 760 60.4
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 2.6e-247 859.0 765 59.6
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 7.6e-247 857.4 747 60.1
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.3e-246 856.7 703 63.6
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 4.1e-245 851.7 747 59.8
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 4.6e-244 848.2 754 59.9
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 4.6e-244 848.2 708 60.9
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 7.8e-244 847.4 755 58.9
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.0e-243 847.0 749 59.7
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 3.0e-243 845.5 724 60.2
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 3.9e-243 845.1 755 58.8
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 5.1e-243 844.7 734 61.2
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 8.6e-243 844.0 755 58.7
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 8.6e-243 844.0 757 59.6
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 5.6e-242 841.3 726 60.3
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 9.6e-242 840.5 750 59.6
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 2.1e-241 839.3 730 60.1
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 4.7e-241 838.2 745 58.7
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 4.7e-241 838.2 702 61.1
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 8.1e-241 837.4 739 59.3
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 1.1e-240 837.0 758 58.6
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 1.1e-240 837.0 730 60.3
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.8e-240 836.3 759 58.8
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 5.2e-240 834.7 730 60.0
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 8.9e-240 833.9 746 60.1
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 8.9e-240 833.9 733 59.3
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 2.0e-239 832.8 728 59.8
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 2.6e-239 832.4 759 57.0
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 5.8e-239 831.2 711 60.3
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.7e-238 829.7 760 58.8
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 2.2e-238 829.3 728 60.3
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 2.9e-238 828.9 738 59.3
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 6.4e-238 827.8 707 61.0
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.1e-237 827.0 698 61.6
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 1.9e-237 826.2 731 58.7
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 3.2e-237 825.5 740 59.1
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 7.1e-237 824.3 805 55.4
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 2.1e-236 822.8 734 60.2
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.1e-236 822.8 744 58.9
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 7.8e-236 820.8 693 60.8
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 1.3e-235 820.1 724 59.3
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 1.7e-235 819.7 728 58.9
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 1.7e-235 819.7 728 59.8
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.1e-235 818.1 765 58.7
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 6.6e-235 817.8 715 60.6
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 6.6e-235 817.8 710 60.7
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 8.7e-235 817.4 733 57.6
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 3.3e-234 815.5 789 55.5
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 7.3e-234 814.3 724 58.7
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 7.3e-234 814.3 735 57.6
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.6e-233 813.1 740 56.9
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.6e-233 813.1 740 56.9
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.8e-233 812.4 743 59.1
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 4.8e-233 811.6 739 57.6
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.1e-232 810.4 761 57.3
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.8e-232 809.7 708 59.7
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 2.4e-232 809.3 737 57.3
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 3.1e-232 808.9 761 56.8
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.5e-231 806.6 749 57.0
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 1.5e-231 806.6 763 56.6
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.0e-231 806.2 748 58.2
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 2.0e-231 806.2 746 57.1
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 3.0e-227 792.3 768 54.8
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 4.8e-225 785.0 702 58.1
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 6.2e-225 784.6 703 58.0
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.4e-224 783.5 711 57.4
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 2.6e-223 779.2 709 58.0
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 8.1e-217 757.7 990 45.2
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 2.4e-216 756.1 748 55.2
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 3.8e-214 748.8 717 54.5
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 8.4e-214 747.7 712 56.0
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 4.2e-213 745.3 710 55.8
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.5e-207 726.9 944 45.7
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.6e-204 716.8 857 48.0
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 2.1e-204 716.5 666 58.3
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 9.0e-200 701.0 632 59.0
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 4.6e-196 688.7 676 53.8
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 3.3e-194 682.6 717 54.4
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 3.6e-188 662.5 594 58.4
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 1.4e-187 660.6 756 49.5
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 2.6e-175 619.8 678 49.3
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 3.7e-169 599.4 575 57.4
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 1.0e-166 591.3 526 58.7
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 5.2e-163 578.9 495 61.8
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 5.4e-160 568.9 734 45.1
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 7.3e-157 558.5 584 53.9
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 6.8e-155 552.0 768 42.7
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.9e-153 545.8 661 49.3
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 4.9e-153 545.8 708 44.1
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.7e-129 467.6 457 56.5
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.1e-128 464.9 469 54.8
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 7.8e-127 458.8 393 59.3
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 3.9e-118 429.9 381 57.7
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 5.3e-107 392.9 440 47.5
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 5.9e-90 336.3 682 35.3
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 2.7e-87 327.4 302 57.9
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.2e-80 303.9 327 54.4
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.9e-73 280.8 294 55.4
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.9e-73 280.8 233 65.7
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 1.1e-72 278.9 160 83.8
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 3.0e-70 270.8 1013 25.4
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.5e-69 268.5 266 51.9
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 8.2e-68 262.7 189 63.5
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 6.7e-62 243.0 271 51.7
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 2.1e-55 221.5 679 28.7
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 6.3e-52 209.9 232 52.2
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 2.4e-51 208.0 163 58.3
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 5.9e-50 203.4 355 38.9
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 5.5e-48 196.8 163 60.1
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.9e-40 171.8 124 67.7
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 3.7e-28 131.0 130 55.4
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 4.9e-28 130.6 259 40.2
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.1e-27 127.5 120 59.2
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.3e-25 121.7 228 34.6
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.5e-24 118.2 89 70.8
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.3e-24 117.5 123 54.5
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 5.8e-21 107.1 190 34.2
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 3.2e-19 101.3 101 58.4
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.7e-17 95.5 64 71.9
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 8.6e-17 93.2 64 70.3
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.2e-10 72.8 155 27.7
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.1e-10 72.0 54 63.0
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.1e-10 72.0 54 63.0
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 2.7e-10 71.6 165 26.1
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 6.0e-10 70.5 165 32.1
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.7e-09 68.9 194 29.4
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 3.0e-09 68.2 124 33.1
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 1.9e-08 65.5 58 50.0
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 6.2e-07 60.5 46 54.3


User provided reference genes

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