Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 2.8e-249 864.8 419 100.0
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 2.5e-234 815.1 419 94.3
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 2.4e-232 808.5 421 92.9
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 4.1e-224 781.2 420 89.0
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 5.0e-222 774.2 412 89.6
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 3.8e-214 748.0 421 85.7
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 6.5e-214 747.3 420 85.0
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 3.2e-213 745.0 419 85.9
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 3.6e-212 741.5 419 85.0
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.1e-210 736.5 413 85.5
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 2.0e-210 735.7 422 85.1
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 1.7e-209 732.6 413 85.0
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 4.8e-209 731.1 416 85.3
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 2.4e-208 728.8 424 83.7
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 9.1e-208 726.9 420 84.0
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 9.1e-208 726.9 416 84.6
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 9.4e-205 716.8 423 83.2
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.2e-204 716.5 439 80.9
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 8.2e-201 703.7 420 80.5
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 2.6e-186 655.6 413 78.7
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 5.4e-176 621.3 414 71.0
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.9e-173 612.8 416 70.4
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 2.1e-172 609.4 408 70.6
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 4.7e-172 608.2 406 71.2
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 1.8e-171 606.3 401 71.8
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 6.8e-171 604.4 418 68.4
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 2.0e-170 602.8 406 69.7
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.6e-170 602.4 413 69.0
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 4.4e-170 601.7 413 68.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 2.9e-169 599.0 416 71.2
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 3.7e-169 598.6 419 70.2
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 1.4e-168 596.7 414 67.6
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 2.4e-168 595.9 416 68.5
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 3.2e-168 595.5 415 68.7
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 4.1e-168 595.1 401 71.1
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 4.1e-168 595.1 407 69.8
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.0e-167 592.8 416 68.3
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 3.5e-167 592.0 406 69.7
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.3e-166 590.1 402 70.1
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.7e-166 589.7 420 67.4
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 8.6e-166 587.4 415 67.0
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 8.6e-166 587.4 425 67.3
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.5e-165 586.6 406 69.2
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.9e-165 586.3 414 67.4
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 2.5e-165 585.9 415 68.2
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 2.5e-165 585.9 383 71.8
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 5.6e-165 584.7 419 66.6
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 9.5e-165 583.9 415 66.7
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 1.2e-164 583.6 411 68.6
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 1.6e-164 583.2 415 67.7
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-163 580.5 408 68.9
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.0e-163 580.5 420 68.1
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.0e-163 580.5 403 69.0
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 2.3e-163 579.3 420 66.4
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 4.0e-163 578.6 408 67.9
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 6.8e-163 577.8 414 66.4
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.2e-162 577.0 406 68.2
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 1.5e-162 576.6 422 66.8
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 2.6e-162 575.9 403 67.5
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 4.4e-162 575.1 414 66.9
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 9.8e-162 573.9 401 69.1
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 2.2e-161 572.8 387 69.0
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 4.9e-161 571.6 419 67.1
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 4.9e-161 571.6 383 70.2
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.0e-158 563.9 412 65.5
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 3.9e-158 562.0 409 64.3
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 5.0e-158 561.6 411 66.9
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 6.6e-158 561.2 382 70.2
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 1.1e-157 560.5 360 78.3
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 3.3e-157 558.9 381 69.3
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 9.5e-157 557.4 364 70.9
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 9.5e-157 557.4 454 60.6
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 9.5e-157 557.4 461 61.0
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.2e-156 557.0 410 65.1
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 3.6e-156 555.4 411 66.2
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 3.6e-156 555.4 414 64.3
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 3.1e-155 552.4 407 65.8
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 1.2e-154 550.4 408 64.2
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 5.8e-154 548.1 295 83.1
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 7.5e-154 547.7 410 64.9
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.1e-152 543.9 416 61.8
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.6e-151 540.0 408 63.5
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 3.0e-150 535.8 409 65.5
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 3.0e-150 535.8 342 72.5
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 4.3e-149 531.9 344 70.3
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 4.3e-149 531.9 396 61.9
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 5.6e-149 531.6 368 66.6
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 3.6e-148 528.9 413 62.5
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 8.9e-147 524.2 344 68.9
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 4.4e-146 521.9 373 67.3
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 4.7e-140 501.9 444 57.2
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 8.1e-140 501.1 370 65.9
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.9e-137 491.9 368 65.5
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 8.4e-137 491.1 368 65.5
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.4e-136 490.3 337 65.9
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 3.0e-134 482.6 382 61.5
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 5.1e-134 481.9 414 56.5
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-129 467.2 410 59.5
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 7.1e-128 461.5 417 56.1
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.6e-127 460.3 420 56.4
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 4.8e-124 448.7 369 56.6
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.1e-123 447.6 370 56.8
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.6e-122 441.4 408 57.1
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.8e-121 439.1 361 62.0
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.3e-118 429.9 409 52.1
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 3.0e-118 429.5 354 61.9
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 9.6e-117 424.5 354 61.6
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.4e-115 420.6 323 64.1
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.4e-115 419.9 307 66.1
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 8.4e-113 411.4 400 54.2
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-112 410.6 247 74.9
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 1.2e-111 407.5 409 51.8
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 6.0e-111 405.2 320 63.1
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 4.1e-107 392.5 252 74.2
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.4e-106 389.4 418 51.4
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 7.6e-106 388.3 442 46.2
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 3.3e-101 372.9 274 64.6
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 4.8e-100 369.0 283 56.5
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 8.5e-97 358.2 415 45.1
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 6.3e-92 342.0 200 74.0
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.4e-91 340.9 199 74.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-88 330.1 351 52.7
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-87 327.0 272 61.0
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 2.3e-86 323.6 270 60.7
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 8.8e-86 321.6 167 88.6
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-85 321.2 202 74.8
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.4e-85 318.5 202 73.8
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-82 310.5 200 73.5
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 5.3e-75 285.8 296 44.6
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 3.6e-71 273.1 402 39.1
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 1.1e-64 251.5 165 67.9
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.9e-60 236.1 194 60.8
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.0e-59 232.3 144 74.3
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.0e-59 232.3 144 74.3
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.0e-59 232.3 144 74.3
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.8e-58 228.8 144 73.6
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 1.8e-54 217.6 252 46.8
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.5e-53 212.2 154 64.9
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 2.3e-46 190.7 119 73.1
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-43 180.3 96 82.3
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-42 178.3 179 51.4
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 3.2e-35 153.7 86 75.6
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 3.5e-34 150.2 108 64.8
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 6.0e-34 149.4 100 67.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 4.2e-27 126.7 84 65.5
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.8e-26 122.5 74 75.7
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.9e-22 109.4 62 75.8
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 3.4e-13 80.5 92 44.6
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 7.6e-13 79.3 47 78.7
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.1e-11 75.5 327 26.3
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.4e-11 75.1 43 67.4
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.4e-08 62.8 111 40.5
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 2.1e-07 61.2 36 75.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.8e-07 60.1 78 41.0


User provided reference genes

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