Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 3464.1 1884 100.0
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 3188.3 1913 92.3
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 3055.4 1929 88.6
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 2917.5 1918 85.2
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 2823.1 1893 82.4
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2780.7 1844 82.0
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2756.5 1891 79.8
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2751.9 1920 79.0
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2743.4 1797 83.5
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2734.5 1809 82.7
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2732.2 1902 79.3
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2727.6 1925 79.9
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2727.6 1925 79.9
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2727.2 1923 80.1
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2721.8 1899 79.1
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 2405.9 1919 73.2
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2361.6 1860 70.7
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 2251.5 1444 86.1
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2238.0 1872 67.7
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1994.9 1419 79.7
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1973.7 1878 59.2
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1942.5 1845 59.7
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1938.7 1837 58.9
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1937.2 1853 59.1
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1934.1 1874 58.9
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1933.3 1874 58.8
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1911.0 1914 57.3
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1894.0 1964 57.8
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1893.6 1937 55.9
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1883.6 1848 57.7
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1882.1 1978 57.5
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1882.1 1977 57.7
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1880.5 1841 58.1
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1878.6 1880 57.6
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1877.4 1877 58.6
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1873.6 2006 57.1
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1870.9 1913 56.1
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1870.5 1887 57.2
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1869.7 1864 57.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1868.6 1833 57.4
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1866.3 1872 57.5
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1860.9 1937 57.9
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1860.1 1830 57.8
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1859.3 1903 56.4
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1855.9 1829 57.5
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1852.0 1942 57.0
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1849.3 1890 57.0
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1846.2 2001 55.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1845.5 1833 58.2
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1842.4 1851 57.1
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1835.1 1892 55.9
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1832.8 1881 57.6
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1830.5 1867 56.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1829.7 1845 56.6
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1824.3 1796 57.7
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1822.4 1856 57.7
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1820.8 1908 55.4
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1819.3 1911 55.6
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1819.3 1968 56.6
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1812.3 1897 54.8
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1810.0 1888 56.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1799.3 1856 55.3
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1793.5 1814 56.9
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1789.2 1867 55.2
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1789.2 1877 55.8
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1787.3 1939 54.8
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1786.2 1831 56.3
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1777.7 1869 55.5
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1775.4 1840 56.4
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1775.0 1998 53.5
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1767.7 1998 54.8
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1760.7 1888 53.9
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1758.4 1867 55.0
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1751.9 1813 55.4
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1750.3 1922 54.5
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1749.9 1866 54.5
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1747.3 1951 54.2
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1744.6 1901 55.2
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1739.9 1979 54.3
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1734.9 1875 54.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1731.8 1803 55.3
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1730.7 1933 54.9
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1727.2 1909 53.3
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1720.3 1854 55.6
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1711.0 1889 54.8
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1710.7 1884 53.7
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1704.9 1814 55.3
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1704.1 1880 53.4
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1702.6 1889 52.0
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1697.6 1832 53.5
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1693.3 1850 53.1
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1679.8 1865 53.6
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1679.8 1854 53.1
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1674.4 1883 51.7
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1660.2 1800 53.8
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1654.0 1864 53.1
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1639.4 1817 53.3
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1624.4 1848 51.2
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1616.3 1867 50.7
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1603.6 1827 51.1
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1582.0 1910 49.5
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1553.1 1925 49.4
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1539.2 1902 48.6
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1538.1 1716 52.3
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1531.5 1902 49.2
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1489.6 1716 51.7
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1448.0 1913 46.7
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1394.4 1874 46.1
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1371.3 1887 44.8
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1326.6 1293 57.8
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1312.7 1936 44.1
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1293.9 1905 43.3
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1293.9 1905 43.3
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1285.0 1844 43.8
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1215.7 1859 43.6
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1172.9 1248 56.5
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1133.2 1554 47.6
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1111.3 1220 56.4
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1101.3 1767 41.3
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1090.9 1847 39.9
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 7.0e-300 1035.0 1050 56.7
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 4.6e-267 926.0 1342 46.1
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 5.1e-266 922.5 1532 40.6
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.6e-257 891.7 972 53.6
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 2.4e-247 860.5 923 53.8
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.5e-238 831.2 898 54.8
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.2e-236 823.2 1771 35.1
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 9.6e-233 812.0 1443 41.9
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.9e-228 797.7 801 55.8
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 4.2e-220 770.0 871 52.2
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.1e-209 735.3 810 52.5
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 3.0e-165 587.8 444 72.1
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.2e-159 567.8 489 59.3
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.1e-158 565.1 691 47.8
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 2.5e-156 558.1 700 46.0
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.6e-150 538.9 770 43.9
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.9e-140 505.4 495 54.3
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.4e-138 499.2 648 48.0
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.9e-133 481.1 338 66.9
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.1e-119 436.4 433 54.3
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.2e-119 434.5 434 54.4
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 4.6e-110 404.4 1261 27.6
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 2.0e-97 362.5 351 56.4
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.0e-85 323.6 416 47.4
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.9e-80 305.4 614 35.3
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.4e-74 286.6 2061 22.7
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 9.8e-68 263.8 446 37.9
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 3.4e-60 238.8 161 70.8
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.5e-52 211.1 222 56.3
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 7.0e-50 204.5 856 27.6
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 3.0e-48 199.1 255 45.9
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.6e-48 197.6 445 35.3
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 3.3e-47 195.7 141 74.5
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 3.3e-39 169.1 189 58.2
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 4.6e-33 148.7 77 92.2
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 4.2e-18 99.0 236 34.3
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.0e-12 80.1 80 55.0
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.4e-10 73.9 43 69.8
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.0e-08 66.2 49 53.1
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.9e-07 63.5 42 66.7
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 9.6e-07 61.2 82 37.8
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 6.2e-06 58.5 76 46.1


User provided reference genes

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