Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 2.9e-269 931.4 507 100.0
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 2.4e-146 523.1 349 81.9
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 8.4e-115 418.3 384 60.2
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 2.7e-105 386.7 332 65.1
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 7.3e-103 378.6 368 65.2
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 1.1e-98 364.8 359 62.7
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 1.4e-64 251.5 315 48.6
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 1.4e-64 251.5 315 48.6
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 1.5e-63 248.1 369 43.6
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 2.5e-63 247.3 418 39.0
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 9.7e-63 245.4 409 40.6
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 4.8e-62 243.0 419 38.7
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 2.4e-61 240.7 318 49.4
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 5.3e-61 239.6 354 50.6
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.5e-60 238.0 415 39.5
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.4e-60 236.9 454 40.7
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.4e-58 231.5 392 40.1
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 5.5e-58 229.6 418 38.3
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.2e-57 228.4 403 39.7
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 4.7e-57 226.5 418 38.0
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.3e-56 224.2 413 36.8
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 2.3e-56 224.2 414 37.4
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.3e-56 224.2 401 39.2
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 6.7e-56 222.6 400 38.5
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 6.7e-56 222.6 396 40.2
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 8.8e-56 222.2 423 36.9
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 4.4e-55 219.9 370 40.0
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 5.7e-55 219.5 383 39.4
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 9.7e-55 218.8 421 36.8
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.7e-54 218.0 423 36.4
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 2.2e-54 217.6 314 45.5
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 1.9e-26 124.8 106 57.5
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.3e-22 112.1 197 34.0
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.3e-22 112.1 203 36.0
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.7e-22 111.7 184 39.1
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.7e-22 111.7 220 34.5
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 8.3e-22 109.4 197 35.5
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 9.2e-21 105.9 217 35.9
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.5e-20 104.0 423 26.0
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 7.8e-20 102.8 230 33.0
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 7.8e-20 102.8 196 33.2
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.0e-19 102.4 198 33.8
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.7e-19 101.7 189 36.0
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.7e-19 101.7 420 27.1
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.3e-19 101.3 201 35.3
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 2.3e-19 101.3 207 33.8
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 3.0e-19 100.9 179 36.3
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 3.0e-19 100.9 233 31.3
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 3.0e-19 100.9 233 32.2
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 5.0e-19 100.1 267 33.0
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 6.6e-19 99.8 176 36.9
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-18 99.0 424 27.1
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.5e-18 98.6 251 32.7
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 2.5e-18 97.8 134 42.5
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.3e-18 97.4 272 29.8
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 7.3e-18 96.3 446 24.7
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 2.1e-17 94.7 143 39.2
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 3.6e-17 94.0 139 41.7
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 4.7e-17 93.6 226 30.5
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 4.7e-17 93.6 140 38.6
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 8.0e-17 92.8 217 30.4
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.0e-16 92.4 192 32.8
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-16 91.7 216 30.1
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 4.0e-16 90.5 438 26.0
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.8e-16 89.7 218 30.7
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 1.5e-15 88.6 228 31.1
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 2.6e-15 87.8 243 30.0
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 2.6e-15 87.8 211 29.4
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.6e-15 87.8 124 39.5
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.8e-15 86.7 109 44.0
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.8e-15 86.7 109 44.0
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.8e-15 86.7 109 44.0
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.5e-15 86.3 315 27.6
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-14 85.5 108 43.5
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 2.2e-14 84.7 246 26.8
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 2.9e-14 84.3 204 31.4
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 2.9e-14 84.3 207 28.5
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.9e-14 84.3 111 45.0
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 2.9e-14 84.3 223 30.9
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 4.9e-14 83.6 285 26.3
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 8.3e-14 82.8 115 43.5
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 8.3e-14 82.8 211 28.4
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.1e-13 82.4 179 32.4
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.1e-13 82.4 261 26.4
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.9e-13 81.6 155 32.3
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.9e-13 81.6 145 33.1
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.9e-13 81.6 233 30.0
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.9e-13 81.6 96 46.9
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.9e-13 81.6 91 45.1
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.1e-13 80.5 205 30.7
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 7.0e-13 79.7 238 28.2
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.2e-12 79.0 174 33.9
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.2e-12 79.0 130 38.5
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.2e-12 79.0 220 28.2
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.6e-12 78.6 195 31.3
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 3.5e-12 77.4 145 35.2
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 6.0e-12 76.6 123 36.6
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 6.0e-12 76.6 225 28.9
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.3e-11 75.5 271 26.2
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.7e-11 75.1 187 31.0
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 3.0e-11 74.3 187 31.0
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 3.0e-11 74.3 265 25.7
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 6.6e-11 73.2 109 42.2
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 6.6e-11 73.2 272 26.8
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 6.6e-11 73.2 158 32.3
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 6.6e-11 73.2 108 38.0
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.9e-10 71.6 105 39.0
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 9.5e-10 69.3 179 29.6
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 1.2e-09 68.9 117 34.2
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 1.6e-09 68.6 145 29.7
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 1.6e-09 68.6 145 29.7
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.6e-09 68.6 174 29.3
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 3.6e-09 67.4 108 37.0
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 4.7e-09 67.0 205 27.8
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 8.1e-09 66.2 113 37.2
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 1.1e-08 65.9 127 29.1
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.4e-08 65.5 118 34.7
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 3.1e-08 64.3 359 24.8
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 4.0e-08 63.9 121 32.2
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 6.8e-08 63.2 103 35.0
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.0e-07 61.6 55 54.5
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 3.4e-07 60.8 200 28.0
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 4.4e-07 60.5 185 28.1
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 9.8e-07 59.3 389 22.4
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 9.8e-07 59.3 81 44.4
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 2.2e-06 58.2 107 34.6
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.7e-06 57.4 184 27.2


User provided reference genes

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