Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.2e-58 229.6 107 100.0
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 5.4e-56 220.7 107 96.3
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 9.2e-56 219.9 107 94.4
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.2e-55 219.5 107 95.3
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.3e-54 216.1 107 93.5
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 7.5e-50 200.3 107 87.9
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 3.2e-48 194.9 107 85.0
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 3.2e-48 194.9 107 85.0
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 3.2e-48 194.9 107 85.0
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 3.2e-48 194.9 107 85.0
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 3.2e-48 194.9 107 85.0
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 3.2e-48 194.9 107 85.0
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 3.2e-48 194.9 107 85.0
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 3.2e-48 194.9 107 85.0
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 3.2e-48 194.9 107 86.0
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 9.2e-48 193.4 107 84.1
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 2.7e-47 191.8 107 84.1
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 1.0e-46 189.9 107 80.4
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 6.8e-43 177.2 108 75.0
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 8.4e-33 143.7 112 59.8
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 8.4e-33 143.7 112 59.8
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 1.4e-32 142.9 111 59.5
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 1.4e-32 142.9 110 62.7
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.4e-32 142.9 111 60.4
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 3.2e-32 141.7 111 59.5
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 4.2e-32 141.4 112 58.9
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 4.2e-32 141.4 112 58.0
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 4.2e-32 141.4 110 60.9
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 4.2e-32 141.4 111 59.5
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 9.3e-32 140.2 111 58.6
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 9.3e-32 140.2 111 58.6
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 9.3e-32 140.2 112 60.7
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 1.6e-31 139.4 112 59.8
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 2.1e-31 139.0 111 59.5
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 2.1e-31 139.0 112 57.1
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 2.7e-31 138.7 112 58.0
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 3.5e-31 138.3 112 57.1
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 3.5e-31 138.3 112 57.1
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 3.5e-31 138.3 112 59.8
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.7e-30 136.0 111 57.7
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 2.3e-30 135.6 112 53.6
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 3.0e-30 135.2 112 56.2
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 3.0e-30 135.2 107 57.0
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 3.9e-30 134.8 110 56.4
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 5.1e-30 134.4 110 55.5
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 6.6e-30 134.0 113 57.5
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 1.5e-29 132.9 69 91.3
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.9e-29 132.5 112 56.2
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.9e-29 132.5 112 56.2
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 3.3e-29 131.7 112 57.1
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 4.3e-29 131.3 111 55.0
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 5.6e-29 131.0 113 58.4
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 5.6e-29 131.0 107 54.2
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.3e-28 129.8 111 54.1
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.6e-28 129.4 111 55.0
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 1.6e-28 129.4 112 53.6
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 2.8e-28 128.6 113 58.4
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 6.2e-28 127.5 112 56.2
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 8.1e-28 127.1 107 53.3
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 1.1e-27 126.7 113 56.6
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 1.4e-27 126.3 112 56.2
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 1.4e-27 126.3 110 54.5
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.8e-27 125.9 113 54.9
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.8e-27 125.9 113 54.9
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.8e-27 125.9 113 54.9
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.8e-27 125.9 113 54.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 2.4e-27 125.6 97 58.8
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 2.4e-27 125.6 111 55.0
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 2.4e-27 125.6 112 51.8
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 3.1e-27 125.2 111 57.7
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 4.0e-27 124.8 113 55.8
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 6.9e-27 124.0 112 54.5
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 2.0e-26 122.5 107 51.4
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 4.5e-26 121.3 113 53.1
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 5.8e-26 120.9 112 51.8
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 7.6e-26 120.6 112 51.8
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 7.6e-26 120.6 111 52.3
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.7e-25 119.4 107 49.5
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-25 119.4 107 49.5
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-25 119.4 107 49.5
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-25 119.4 107 49.5
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-25 119.4 107 49.5
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-25 119.4 107 49.5
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.7e-25 119.4 107 49.5
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 2.2e-25 119.0 112 50.0
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 4.9e-25 117.9 99 52.5
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 4.9e-25 117.9 112 48.2
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 4.9e-25 117.9 112 48.2
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 6.4e-25 117.5 111 50.5
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 6.4e-25 117.5 111 50.5
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 6.4e-25 117.5 111 50.5
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 1.1e-24 116.7 91 60.4
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 1.1e-24 116.7 112 48.2
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 1.9e-24 115.9 111 51.4
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.9e-24 115.9 109 51.4
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 3.2e-24 115.2 111 51.4
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 4.2e-24 114.8 110 50.0
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 4.2e-24 114.8 110 49.1
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.2e-23 113.2 113 49.6
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 4.6e-23 111.3 114 50.9
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.0e-22 110.2 111 51.4
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.3e-22 109.8 112 50.0
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 1.3e-22 109.8 102 52.0
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 1.8e-22 109.4 113 51.3
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 3.9e-22 108.2 116 44.0
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 5.1e-22 107.8 81 59.3
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 5.1e-22 107.8 115 44.3
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 2.5e-21 105.5 111 45.9
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 9.6e-21 103.6 110 48.2
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 1.1e-19 100.1 111 47.7
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.1e-19 100.1 111 45.0
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 1.8e-19 99.4 111 48.6
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 2.0e-18 95.9 102 46.1
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.0e-18 95.9 113 44.2
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 4.5e-18 94.7 107 42.1
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 2.2e-17 92.4 110 42.7
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 2.9e-17 92.0 109 41.3
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 1.4e-16 89.7 137 38.7
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 4.2e-16 88.2 93 45.2
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 2.1e-15 85.9 68 58.8
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 4.6e-15 84.7 84 48.8
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.0e-14 83.6 66 57.6
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 3.0e-14 82.0 75 53.3
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.3e-12 76.6 74 48.6
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 4.8e-12 74.7 68 51.5
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 6.2e-12 74.3 110 37.3
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 7.6e-10 67.4 68 48.5
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 7.6e-10 67.4 126 32.5
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 2.2e-09 65.9 55 54.5
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 3.8e-09 65.1 73 41.1
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 1.9e-08 62.8 71 40.8
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 4.2e-08 61.6 113 31.0
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 5.5e-08 61.2 111 32.4
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 2.7e-07 58.9 116 31.0
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 4.6e-07 58.2 116 31.0
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.0e-06 57.0 116 29.3
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 1.3e-06 56.6 112 28.6
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 3.9e-06 55.1 111 24.3
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 6.7e-06 54.3 118 28.0


User provided reference genes

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