Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 0.0e+00 2296.2 1188 100.0
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 0.0e+00 2011.1 1157 89.6
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 0.0e+00 1884.8 1157 84.8
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 0.0e+00 1800.4 1160 81.5
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 0.0e+00 1770.0 1159 79.7
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 0.0e+00 1741.5 1173 78.4
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1561.6 1164 73.5
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 0.0e+00 1553.5 1167 70.9
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 0.0e+00 1551.2 1171 71.0
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 0.0e+00 1522.3 1232 69.4
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 0.0e+00 1517.3 1147 71.0
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 0.0e+00 1508.8 1161 70.8
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 0.0e+00 1495.7 1164 71.4
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1482.2 1156 71.4
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1471.8 1149 71.4
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1471.1 1149 71.2
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 0.0e+00 1349.0 1169 66.3
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1346.6 1171 65.3
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 0.0e+00 1345.9 1174 64.7
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1337.4 1191 64.4
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 0.0e+00 1320.1 1138 64.9
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 0.0e+00 1269.6 1081 67.6
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 0.0e+00 1249.2 1175 58.7
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 0.0e+00 1211.4 1147 58.5
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 0.0e+00 1125.5 694 83.1
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 2.7e-289 999.2 1146 50.3
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 5.2e-285 984.9 1175 50.2
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 3.4e-284 982.2 1166 49.3
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 6.6e-280 968.0 1200 48.7
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 8.4e-275 951.0 1156 47.8
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 8.4e-275 951.0 1185 48.9
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 5.1e-272 941.8 1187 47.8
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 2.5e-271 939.5 1163 47.5
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 7.3e-271 937.9 1204 48.8
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 5.4e-266 921.8 1162 49.6
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 6.0e-265 918.3 1172 46.3
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 3.3e-263 912.5 1210 45.4
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 1.3e-262 910.6 1161 48.5
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 3.1e-261 906.0 1178 46.2
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.5e-260 903.7 1188 46.0
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 2.1e-257 893.3 1182 47.0
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 9.6e-255 884.4 1142 46.0
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 3.5e-249 865.9 1181 45.9
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.8e-248 863.6 916 52.7
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.5e-247 860.5 916 52.3
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 1.9e-247 860.1 1157 47.4
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 4.8e-246 855.5 1175 46.1
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 2.6e-244 849.7 1177 46.5
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 3.4e-244 849.4 1197 45.7
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 1.4e-242 844.0 1041 49.2
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 1.4e-242 844.0 1187 45.8
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 1.2e-241 840.9 1177 45.2
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 6.3e-238 828.6 1248 42.5
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 1.2e-236 824.3 1199 45.0
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 2.9e-235 819.7 1282 40.9
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 7.2e-234 815.1 1223 42.1
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.8e-232 810.4 1164 43.1
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 1.8e-232 810.4 1229 40.6
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 3.9e-232 809.3 1160 42.9
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 2.6e-231 806.6 926 49.2
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 9.7e-231 804.7 1183 44.6
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 6.3e-230 802.0 1179 44.4
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 6.3e-230 802.0 915 48.7
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 8.2e-230 801.6 1179 44.5
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.1e-229 801.2 981 47.3
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 2.4e-229 800.0 1150 43.0
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.9e-228 795.4 1230 41.1
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 1.3e-227 794.3 1050 47.2
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 1.7e-227 793.9 1142 41.9
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 5.5e-226 788.9 1239 40.7
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 2.7e-225 786.6 1170 42.4
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 5.2e-224 782.3 1140 43.2
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 8.8e-224 781.6 1270 41.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 2.4e-221 773.5 1196 40.8
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 9.1e-221 771.5 1163 42.1
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 9.4e-218 761.5 1185 41.9
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.6e-217 760.8 1275 39.3
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 2.1e-217 760.4 1131 43.2
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 1.4e-216 757.7 1136 42.1
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 4.0e-216 756.1 1122 43.3
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 7.0e-213 745.3 1186 40.2
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.2e-212 744.6 653 58.7
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 4.5e-212 742.7 1077 44.6
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 1.0e-211 741.5 1167 40.9
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 3.8e-211 739.6 1273 40.8
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 4.2e-210 736.1 886 48.5
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 3.6e-209 733.0 1217 40.8
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 2.9e-203 713.4 1193 38.9
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 8.6e-203 711.8 1105 40.5
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.2e-198 697.2 1221 38.9
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 5.8e-191 672.5 1096 40.7
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.7e-188 663.7 1162 39.3
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.7e-188 663.7 1162 39.3
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 5.6e-186 656.0 1124 37.5
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 8.3e-182 642.1 898 41.5
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.2e-177 628.2 633 53.9
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 3.6e-177 626.7 887 42.1
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 2.6e-175 620.5 883 43.6
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 2.3e-171 607.4 1125 37.3
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.5e-170 604.7 1116 39.3
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 2.0e-167 594.3 1120 36.3
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 7.6e-167 592.4 706 46.7
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.8e-160 571.2 1104 35.7
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.7e-158 564.7 658 48.5
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 3.1e-152 543.9 932 38.9
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.6e-148 530.0 946 37.8
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.8e-136 491.5 509 53.2
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.1e-128 465.7 766 38.8
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.4e-128 465.3 420 54.5
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.7e-124 451.1 818 38.4
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 3.4e-119 434.1 839 37.7
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 4.5e-119 433.7 558 46.2
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 1.1e-96 359.4 633 36.5
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 5.0e-94 350.5 1121 30.3
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 5.7e-90 337.0 708 33.5
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.9e-86 324.7 343 50.1
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 7.3e-85 320.1 313 53.7
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 4.7e-84 317.4 963 30.1
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 6.1e-84 317.0 963 30.0
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.3e-81 309.3 284 57.0
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.1e-80 306.2 620 36.5
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 9.2e-80 303.1 613 37.0
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 6.0e-71 273.9 286 50.0
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 8.9e-67 260.0 285 47.7
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.4e-56 225.3 338 38.8
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 3.5e-55 221.5 433 33.0
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 4.3e-53 214.5 500 40.0
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.0e-25 123.6 240 39.2
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.9e-24 119.4 530 24.0
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 4.2e-24 118.2 270 31.1
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 9.3e-24 117.1 282 29.8
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 1.5e-21 109.8 240 31.7
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.0e-09 70.5 180 32.8
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 1.2e-07 63.5 146 34.2
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 1.0e-06 60.5 126 38.9
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 3.9e-06 58.5 45 62.2


User provided reference genes

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