Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 5.0e-193 677.6 333 100.0
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 2.6e-189 665.2 333 97.9
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 2.6e-189 665.2 333 97.9
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 9.8e-189 663.3 333 97.9
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 2.0e-186 655.6 333 95.8
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 2.7e-186 655.2 333 95.2
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 7.8e-186 653.7 333 95.2
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 7.8e-186 653.7 333 95.2
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 7.8e-186 653.7 333 95.2
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 1.0e-185 653.3 333 94.9
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 2.9e-185 651.7 333 95.2
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 2.9e-185 651.7 333 94.6
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 2.9e-185 651.7 333 95.2
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 2.9e-185 651.7 333 95.2
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 4.3e-184 647.9 333 94.3
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 4.3e-184 647.9 333 94.6
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 2.3e-182 642.1 332 93.4
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.0e-182 641.7 333 93.4
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 6.8e-182 640.6 337 93.2
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 8.9e-182 640.2 333 93.4
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 2.6e-181 638.6 333 92.8
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 5.8e-181 637.5 333 92.8
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 7.5e-181 637.1 333 92.5
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 7.5e-181 637.1 333 92.2
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.9e-180 635.2 333 92.2
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 3.7e-180 634.8 333 92.2
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 4.9e-180 634.4 333 92.2
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 4.9e-180 634.4 333 92.5
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 6.4e-180 634.0 333 92.2
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 6.4e-180 634.0 333 92.5
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 8.3e-180 633.6 333 92.2
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.1e-179 633.3 333 91.9
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 1.9e-179 632.5 333 91.3
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.9e-179 632.5 333 92.2
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.9e-179 632.5 333 91.9
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.4e-179 632.1 333 91.3
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 3.2e-179 631.7 333 92.2
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 3.2e-179 631.7 333 92.2
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 3.2e-179 631.7 333 91.6
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.1e-179 631.3 333 91.6
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.1e-179 631.3 333 91.6
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 5.4e-179 630.9 333 91.3
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 5.4e-179 630.9 333 91.9
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 5.4e-179 630.9 333 91.6
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 9.2e-179 630.2 333 91.3
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.2e-178 629.8 333 91.6
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.2e-178 629.8 333 91.9
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.2e-178 629.8 333 91.0
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.2e-178 629.8 333 91.0
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.6e-178 629.4 333 91.3
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.6e-178 629.4 333 91.3
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.6e-178 629.4 333 91.3
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 2.0e-178 629.0 333 91.6
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 2.0e-178 629.0 333 91.3
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 2.0e-178 629.0 333 91.6
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.7e-178 628.6 333 91.6
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 2.7e-178 628.6 333 91.6
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.7e-178 628.6 333 91.6
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 2.7e-178 628.6 331 91.8
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 2.7e-178 628.6 333 91.3
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 2.7e-178 628.6 333 91.6
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 3.5e-178 628.2 333 90.7
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 3.5e-178 628.2 333 91.9
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 4.6e-178 627.9 333 91.3
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 4.6e-178 627.9 333 91.3
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 6.0e-178 627.5 333 90.4
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.0e-177 626.7 333 91.3
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.0e-177 626.7 333 90.7
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.0e-177 626.7 333 91.6
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.3e-177 626.3 333 91.0
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 1.3e-177 626.3 333 91.6
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.7e-177 625.9 333 91.0
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.7e-177 625.9 333 91.0
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.3e-177 625.5 333 91.0
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 2.3e-177 625.5 333 90.7
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 2.3e-177 625.5 333 90.7
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 3.0e-177 625.2 333 91.0
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 3.0e-177 625.2 333 89.8
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 5.0e-177 624.4 333 90.1
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 5.0e-177 624.4 333 90.1
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 5.0e-177 624.4 347 88.8
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 5.0e-177 624.4 333 90.7
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 6.6e-177 624.0 333 90.1
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 8.6e-177 623.6 333 90.7
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.5e-176 622.1 333 89.8
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 2.5e-176 622.1 342 88.6
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 3.3e-176 621.7 333 90.4
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 3.3e-176 621.7 346 88.2
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 4.3e-176 621.3 333 90.1
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 1.6e-175 619.4 333 89.8
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 2.1e-175 619.0 333 90.1
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 2.1e-175 619.0 333 90.1
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 3.6e-175 618.2 333 90.1
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.6e-175 618.2 333 89.5
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 8.0e-175 617.1 333 89.5
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.1e-174 616.7 333 89.8
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 1.4e-174 616.3 333 89.8
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 2.3e-174 615.5 333 88.9
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 3.1e-174 615.1 333 88.9
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 5.2e-174 614.4 333 89.2
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 6.8e-174 614.0 343 87.5
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.2e-173 613.2 333 88.9
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 1.2e-173 613.2 333 88.9
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 3.4e-173 611.7 333 89.5
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.2e-171 605.1 333 87.7
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 2.7e-170 602.1 354 84.5
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-166 588.6 333 84.1
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 5.2e-166 587.8 333 84.1
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 5.4e-163 577.8 333 81.4
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.2e-162 576.6 300 92.3
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.7e-162 575.5 333 82.6
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.9e-161 571.6 333 81.4
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 5.2e-158 561.2 333 84.7
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.7e-153 546.2 333 80.8
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.9e-147 526.2 263 94.7
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 6.2e-143 511.1 326 78.5
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 4.9e-140 501.5 333 72.4
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 1.1e-139 500.4 262 93.1
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 3.2e-139 498.8 247 96.4
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.3e-136 488.8 333 69.7
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 2.1e-135 486.1 245 94.7
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 9.9e-133 477.2 245 91.4
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 7.1e-131 471.1 237 94.5
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 5.1e-129 464.9 325 69.2
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 2.5e-128 462.6 333 72.4
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.9e-123 446.4 248 86.7
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 7.1e-123 444.5 333 66.7
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.8e-119 432.6 324 65.1
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 2.8e-119 432.6 229 91.7
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 6.9e-118 427.9 213 96.2
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.0e-116 424.1 285 75.4
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.3e-104 382.5 208 87.0
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 9.1e-94 347.8 212 78.3
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 5.5e-83 312.0 245 66.5
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 2.0e-61 240.4 132 87.9
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 2.7e-61 240.0 132 87.1
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.1e-45 187.2 118 76.3
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 3.5e-45 186.4 104 88.5
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.6e-45 186.0 118 75.4
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.3e-44 183.7 103 88.3
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.3e-44 183.7 103 88.3
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 4.3e-43 179.5 333 36.0
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 8.4e-39 165.2 94 86.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.2e-31 140.6 94 74.5
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-29 134.8 105 70.5
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.5e-27 127.1 81 79.0
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 9.6e-27 125.2 148 51.4
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.9e-23 113.6 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.1e-22 111.7 59 88.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 3.3e-19 100.1 47 89.4
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 5.6e-19 99.4 59 83.1
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 8.1e-18 95.5 81 63.0
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 1.5e-16 91.3 52 86.5
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 4.5e-16 89.7 62 69.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 6.0e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 2.5e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 9.3e-06 55.5 49 61.2


User provided reference genes

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