Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 4.8e-32 140.6 72 100.0
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.0e-26 122.9 66 93.9
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.9e-26 120.9 66 93.9
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.9e-26 120.9 66 93.9
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 6.7e-26 120.2 66 93.9
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.5e-25 119.0 66 92.4
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 4.8e-24 114.0 66 86.4
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 6.2e-24 113.6 66 86.4
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 3.1e-23 111.3 66 81.8
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.0e-22 108.6 66 81.8
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 2.6e-22 108.2 66 83.3
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.2e-21 105.1 64 82.8
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-20 102.8 66 81.8
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.9e-20 102.1 66 77.3
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 3.2e-20 101.3 64 79.7
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 3.2e-20 101.3 65 81.5
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 3.2e-20 101.3 65 81.5
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 7.1e-20 100.1 65 80.0
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 7.1e-20 100.1 65 80.0
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.6e-19 99.0 62 77.4
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 2.1e-19 98.6 62 75.8
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.1e-19 98.6 62 75.8
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.5e-19 97.8 62 75.8
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 4.6e-19 97.4 62 74.2
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 7.9e-19 96.7 66 72.7
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.0e-18 96.3 70 70.0
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.3e-18 95.9 70 70.0
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 3.0e-18 94.7 61 77.0
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 3.9e-18 94.4 62 71.0
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 3.9e-18 94.4 62 71.0
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 3.9e-18 94.4 66 69.7
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 5.1e-18 94.0 66 69.7
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 6.7e-18 93.6 67 71.6
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 6.7e-18 93.6 66 71.2
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 6.7e-18 93.6 70 67.1
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 6.7e-18 93.6 70 67.1
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 8.7e-18 93.2 62 71.0
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-17 92.8 67 70.1
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.5e-17 92.4 63 76.2
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-17 92.4 63 76.2
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.5e-17 92.4 63 76.2
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.5e-17 92.4 63 68.3
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.9e-17 92.0 66 71.2
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.9e-17 92.0 66 68.2
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.9e-17 92.0 62 69.4
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 2.5e-17 91.7 62 69.4
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 2.5e-17 91.7 66 66.7
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.3e-17 91.3 66 65.2
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.3e-17 90.9 66 69.7
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 4.3e-17 90.9 62 71.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 7.4e-17 90.1 63 69.8
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 7.4e-17 90.1 63 71.4
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 7.4e-17 90.1 63 71.4
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 7.4e-17 90.1 66 63.6
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 7.4e-17 90.1 66 63.6
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 7.4e-17 90.1 62 72.6
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 7.4e-17 90.1 66 69.7
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 7.4e-17 90.1 64 68.8
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 7.4e-17 90.1 70 65.7
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.4e-17 90.1 66 65.2
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 9.7e-17 89.7 63 69.8
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 9.7e-17 89.7 62 69.4
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-16 89.4 69 63.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-16 89.4 69 63.8
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.3e-16 89.4 66 65.2
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.6e-16 89.0 66 63.6
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.6e-16 89.0 66 66.7
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.6e-16 89.0 66 62.1
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.6e-16 89.0 62 69.4
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.6e-16 89.0 70 64.3
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.6e-16 89.0 66 66.7
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.2e-16 88.6 62 71.0
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 2.2e-16 88.6 62 69.4
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 3.7e-16 87.8 66 62.1
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 4.8e-16 87.4 62 69.4
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 4.8e-16 87.4 66 65.2
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 6.3e-16 87.0 62 66.1
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 6.3e-16 87.0 65 69.2
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 8.2e-16 86.7 58 75.9
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-15 85.9 67 67.2
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.4e-15 85.9 60 68.3
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.8e-15 85.5 66 62.1
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 2.4e-15 85.1 66 68.2
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.4e-15 85.1 61 68.9
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.4e-15 85.1 62 67.7
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 3.1e-15 84.7 57 73.7
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 3.1e-15 84.7 66 59.1
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 4.1e-15 84.3 66 62.1
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 5.3e-15 84.0 66 63.6
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 9.0e-15 83.2 66 62.1
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.5e-14 82.4 66 63.6
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 2.0e-14 82.0 62 66.1
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 3.4e-14 81.3 63 66.7
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 3.4e-14 81.3 69 58.0
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 4.5e-14 80.9 66 60.6
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.9e-14 80.5 64 57.8
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.9e-14 80.5 64 57.8
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.7e-14 80.1 63 58.7
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 7.7e-14 80.1 60 61.7
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 7.7e-14 80.1 60 63.3
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 7.7e-14 80.1 60 61.7
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 7.7e-14 80.1 57 66.7
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.0e-13 79.7 62 62.9
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.7e-13 79.0 60 66.7
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 2.2e-13 78.6 66 57.6
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 2.2e-13 78.6 66 57.6
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.9e-13 78.2 66 57.6
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 5.0e-13 77.4 66 62.1
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.0e-13 77.4 66 54.5
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 6.5e-13 77.0 62 61.3
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 8.5e-13 76.6 66 62.1
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.4e-12 75.9 56 64.3
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.4e-12 75.9 67 56.7
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.4e-12 75.9 64 57.8
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.9e-12 75.5 66 53.0
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 4.2e-12 74.3 62 59.7
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 7.2e-12 73.6 61 62.3
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 7.2e-12 73.6 66 57.6
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 9.4e-12 73.2 70 60.0
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.2e-11 72.8 52 69.2
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.6e-11 72.4 60 60.0
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.6e-11 72.4 60 60.0
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.6e-11 72.4 60 60.0
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.6e-11 72.4 60 60.0
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.7e-11 71.6 66 56.1
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.7e-11 71.6 65 52.3
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 3.6e-11 71.2 66 53.0
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 4.6e-11 70.9 70 50.0
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.6e-11 70.9 46 71.7
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.0e-10 69.7 66 51.5
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.0e-10 69.7 66 51.5
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.4e-10 69.3 71 50.7
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.0e-10 68.2 64 53.1
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 3.9e-10 67.8 68 51.5
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 2.0e-09 65.5 40 77.5
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 2.0e-09 65.5 59 50.8
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 4.3e-09 64.3 62 48.4
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 5.7e-09 63.9 45 66.7
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 9.7e-09 63.2 67 53.7
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.3e-08 62.8 65 56.9
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.7e-08 62.4 60 50.0
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 8.2e-08 60.1 43 62.8
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.1e-07 59.7 60 48.3
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 6.9e-07 57.0 62 45.2
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 4.5e-06 54.3 60 46.7


User provided reference genes

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