Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 7.6e-148 527.3 301 100.0
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.5e-143 513.1 301 97.3
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 3.6e-142 508.4 301 96.7
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 8.7e-136 487.3 301 84.7
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 2.0e-132 476.1 301 86.4
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 2.2e-131 472.6 301 83.1
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 3.8e-131 471.9 301 85.7
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.5e-127 459.9 301 83.1
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 2.5e-127 459.1 301 78.4
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 3.3e-127 458.8 301 83.7
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 3.3e-127 458.8 301 82.4
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 3.3e-127 458.8 301 83.7
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 3.3e-127 458.8 301 83.7
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 7.4e-127 457.6 301 82.1
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 7.4e-127 457.6 301 81.7
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.6e-126 456.4 301 85.4
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 79.9
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.2e-124 450.3 302 80.8
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 7.6e-124 447.6 303 83.5
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.9e-123 445.7 302 78.1
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.9e-122 443.0 303 74.9
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.5e-122 442.6 301 77.7
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.5e-122 442.6 301 77.7
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.2e-122 442.2 301 79.7
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 4.2e-122 441.8 302 78.1
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 7.1e-122 441.0 301 77.7
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 9.3e-122 440.7 304 74.7
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.2e-121 440.3 304 78.6
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.2e-121 440.3 304 78.6
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.2e-121 440.3 304 78.6
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.6e-121 439.9 301 77.1
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 78.3
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.3e-120 436.8 304 75.3
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.8e-120 436.4 303 77.6
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.8e-120 436.4 304 78.3
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 78.0
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 2.3e-120 436.0 303 78.5
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 75.0
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 3.9e-120 435.3 304 78.3
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 4.3e-119 431.8 304 77.0
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 7.4e-119 431.0 303 79.9
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 9.7e-119 430.6 304 77.6
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.3e-118 430.3 308 77.3
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.3e-118 430.3 303 77.6
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.6e-118 429.9 302 73.8
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.6e-118 429.9 303 75.6
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 1.6e-118 429.9 304 79.3
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.6e-118 429.9 304 74.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.7e-118 428.7 303 78.2
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 4.8e-118 428.3 302 82.1
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 4.8e-118 428.3 303 79.5
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 6.3e-118 427.9 303 75.9
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 8.2e-118 427.6 306 80.1
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 8.2e-118 427.6 306 80.1
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 8.2e-118 427.6 306 80.1
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.4e-117 426.8 303 76.9
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 4.1e-117 425.2 303 77.6
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 4.1e-117 425.2 303 73.3
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 6.9e-117 424.5 300 78.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 9.0e-117 424.1 301 73.4
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.5e-116 423.3 303 77.2
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.6e-116 422.5 301 73.4
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 2.6e-116 422.5 303 74.6
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 3.4e-116 422.2 305 78.7
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 3.4e-116 422.2 305 75.4
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 3.4e-116 422.2 303 74.6
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 4.5e-116 421.8 303 78.9
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 7.6e-116 421.0 302 71.9
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.0e-115 420.6 303 78.2
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.0e-115 420.6 300 75.0
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.3e-115 420.2 297 74.4
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.3e-115 420.2 301 71.1
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.3e-115 420.2 301 71.1
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 1.3e-115 420.2 303 74.3
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.7e-115 419.9 303 73.6
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 2.2e-115 419.5 301 72.4
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.2e-115 419.5 300 74.0
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 3.8e-115 418.7 303 71.0
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.1e-114 417.2 301 71.4
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.1e-114 417.2 301 78.1
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.9e-114 416.4 303 76.9
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.9e-114 416.4 303 74.9
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.9e-114 416.4 303 74.9
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.5e-114 416.0 302 74.8
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 2.5e-114 416.0 303 74.6
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.2e-113 413.7 303 72.6
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.6e-113 413.3 301 76.4
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.1e-113 412.9 303 74.6
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 2.1e-113 412.9 301 71.4
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 3.6e-113 412.1 303 70.0
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 3.6e-113 412.1 303 75.6
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 1.8e-112 409.8 303 74.9
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.8e-112 409.8 301 76.4
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 2.3e-112 409.5 304 74.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 5.1e-112 408.3 303 74.6
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 6.7e-112 407.9 299 70.2
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 6.7e-112 407.9 303 76.2
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 8.8e-112 407.5 284 75.0
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 8.8e-112 407.5 301 72.1
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.9e-111 406.4 303 75.6
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 4.3e-111 405.2 303 69.6
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 7.4e-111 404.4 302 68.9
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.7e-110 403.3 301 74.1
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 4.8e-110 401.7 303 69.6
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.4e-109 400.2 301 68.8
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 9.1e-109 397.5 303 68.6
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.5e-108 396.7 303 75.6
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 3.4e-108 395.6 298 75.2
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 5.1e-104 381.7 312 68.3
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 6.7e-104 381.3 301 66.1
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 3.7e-102 375.6 302 64.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.0e-99 367.5 303 63.7
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.9e-99 365.9 279 71.7
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.0e-96 357.5 301 61.5
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 7.4e-95 351.3 300 62.0
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.7e-91 340.1 292 65.4
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 2.3e-88 329.7 323 62.5
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 5.7e-87 325.1 302 55.3
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 8.2e-86 321.2 251 68.1
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 8.5e-83 311.2 195 77.4
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 4.0e-80 302.4 302 57.9
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.2e-80 302.0 251 70.1
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.2e-79 300.8 302 53.6
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 8.3e-78 294.7 297 57.2
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 5.2e-72 275.4 301 55.5
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 1.9e-66 256.9 298 49.7
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.3e-64 250.0 134 90.3
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.1e-56 224.6 197 61.9
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 4.4e-55 219.2 220 63.2
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 3.2e-53 213.0 213 63.8
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.1e-52 210.3 271 55.7
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 4.4e-47 192.6 305 42.6
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.2e-44 184.5 293 42.0
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.6e-44 184.1 193 56.0
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.7e-41 172.6 195 53.3
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.4e-40 170.2 165 67.3
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 2.0e-39 167.2 197 47.7
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 3.8e-38 162.9 101 78.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 5.4e-37 159.1 111 74.8
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 2.5e-34 150.2 227 45.4
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 4.4e-31 139.4 260 50.4
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 3.8e-30 136.3 87 72.4
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.1e-28 130.6 163 48.5
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 5.6e-26 122.5 301 37.2
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.6e-25 120.9 301 37.2
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 2.4e-21 107.1 61 83.6
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 4.2e-21 106.3 58 81.0
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.2e-20 104.8 58 79.3
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.6e-20 104.4 152 46.1
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 2.3e-19 100.5 59 79.7
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.5e-15 87.8 116 60.3
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 5.5e-13 79.3 119 54.6
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 3.3e-10 70.1 52 73.1
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 5.6e-10 69.3 56 62.5
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 9.6e-10 68.6 60 70.0
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 2.8e-09 67.0 128 40.6
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 4.5e-07 59.7 78 47.4


User provided reference genes

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