Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 5.2e-190 667.5 331 100.0
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 2.8e-180 635.2 331 95.5
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 1.7e-172 609.4 331 89.7
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 5.4e-171 604.4 334 91.0
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 2.7e-170 602.1 331 89.1
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 4.7e-167 591.3 335 89.0
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 6.6e-161 570.9 331 85.2
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 1.5e-160 569.7 331 85.8
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 2.8e-159 565.5 331 83.4
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 1.4e-158 563.1 333 84.4
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 1.2e-157 560.1 329 84.5
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 1.2e-157 560.1 329 84.5
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 1.2e-157 560.1 329 84.5
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 2.2e-148 529.3 333 82.3
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 2.2e-148 529.3 333 82.3
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 2.2e-148 529.3 333 82.3
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.4e-147 526.6 335 78.5
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 1.1e-139 500.4 332 77.7
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 2.4e-134 482.6 335 75.2
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.1e-126 457.2 328 68.6
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.1e-126 457.2 328 68.6
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 6.0e-122 441.4 326 69.6
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.3e-121 440.3 324 67.6
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.5e-120 436.8 335 65.7
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 3.3e-120 435.6 333 67.0
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 9.6e-120 434.1 328 67.1
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 4.8e-119 431.8 334 65.0
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 1.5e-117 426.8 329 67.5
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.6e-117 426.0 338 66.0
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 4.5e-117 425.2 336 66.4
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 5.8e-117 424.9 332 66.3
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 7.6e-117 424.5 353 62.9
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 9.9e-117 424.1 331 64.7
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.2e-116 422.9 330 66.1
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 6.4e-116 421.4 331 64.7
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 6.4e-116 421.4 331 65.9
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 6.4e-116 421.4 335 64.5
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 8.4e-116 421.0 342 64.6
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.1e-115 420.6 342 64.3
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.4e-115 420.2 327 64.5
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 4.2e-115 418.7 335 64.5
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 5.5e-115 418.3 325 65.8
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 5.5e-115 418.3 335 64.5
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 7.1e-115 417.9 347 64.8
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 1.6e-114 416.8 333 65.8
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.6e-114 416.8 331 65.6
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 3.5e-114 415.6 325 65.5
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 6.0e-114 414.8 331 65.0
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 6.7e-113 411.4 333 66.1
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 8.7e-113 411.0 332 65.4
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.1e-112 410.6 336 63.4
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 4.3e-112 408.7 326 64.7
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 5.6e-112 408.3 336 63.7
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 1.3e-111 407.1 289 68.2
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.3e-111 407.1 335 64.2
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.6e-111 406.8 329 62.3
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 2.1e-111 406.4 330 63.6
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 2.8e-111 406.0 335 63.9
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 2.8e-111 406.0 339 61.7
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 4.8e-111 405.2 375 58.9
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 8.1e-111 404.4 340 61.5
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 8.1e-111 404.4 332 61.7
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 8.1e-111 404.4 333 63.7
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 8.1e-111 404.4 339 63.1
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 1.4e-110 403.7 328 64.6
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.8e-110 403.3 339 63.1
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 1.8e-110 403.3 346 61.8
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 2.4e-110 402.9 331 63.4
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 5.3e-110 401.7 333 63.1
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 9.0e-110 401.0 334 62.3
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 2.6e-109 399.4 356 60.4
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 3.4e-109 399.1 340 61.5
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 7.6e-109 397.9 334 63.8
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.2e-108 396.4 309 66.0
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 2.3e-105 386.3 328 62.2
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 3.9e-105 385.6 349 58.7
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 3.9e-105 385.6 328 61.9
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 7.4e-104 381.3 304 65.8
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 9.6e-104 380.9 311 63.7
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 6.3e-103 378.3 306 62.1
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 8.2e-103 377.9 332 60.2
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 5.3e-102 375.2 343 54.8
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 6.9e-102 374.8 327 62.1
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 5.9e-101 371.7 329 58.7
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 1.0e-100 370.9 331 58.3
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 1.7e-100 370.2 310 64.5
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 1.7e-100 370.2 254 69.3
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 8.4e-100 367.9 306 64.1
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.1e-99 367.5 326 61.3
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 3.2e-99 365.9 308 62.7
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.1e-98 363.2 348 57.8
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 4.6e-98 362.1 323 60.4
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 3.9e-97 359.0 250 71.6
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.9e-96 356.7 357 56.0
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 9.7e-96 354.4 243 68.3
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 4.1e-94 349.0 276 62.3
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.3e-94 348.6 269 63.2
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.2e-93 347.4 319 55.5
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 2.0e-93 346.7 311 56.6
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.0e-93 346.7 284 58.5
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.6e-90 337.0 208 77.4
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.1e-90 336.7 219 75.3
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 6.1e-90 335.1 288 62.8
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 7.9e-90 334.7 286 61.5
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 1.5e-88 330.5 377 49.9
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 7.4e-88 328.2 214 73.4
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.5e-85 320.5 283 60.4
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 8.5e-84 314.7 257 59.1
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 6.1e-82 308.5 283 59.4
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 3.0e-81 306.2 234 59.8
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.4e-78 296.6 257 56.4
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 5.9e-77 292.0 257 56.8
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 1.0e-76 291.2 329 49.8
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 2.7e-74 283.1 228 58.8
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 2.0e-69 266.9 228 63.2
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 5.9e-69 265.4 235 61.3
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 6.5e-68 261.9 298 48.0
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.3e-63 247.7 221 62.0
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 4.1e-62 242.7 168 69.6
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 5.2e-57 225.7 218 50.5
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 7.5e-56 221.9 224 49.6
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 4.1e-54 216.1 187 55.1
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 5.4e-54 215.7 230 53.0
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 2.7e-45 186.8 175 56.6
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 5.2e-41 172.6 116 69.8
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.4e-40 169.9 210 45.7
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 5.8e-40 169.1 168 55.4
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-38 164.9 210 44.8
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.1e-38 162.9 222 43.2
AT2G10550 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.6e-37 161.0 211 52.6
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 1.0e-36 158.3 100 74.0
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.6e-36 155.2 188 45.7
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 2.8e-34 150.2 102 74.5
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 9.8e-32 141.7 96 71.9
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.3e-31 141.4 210 41.0
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.2e-31 140.6 184 42.4
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 1.1e-30 138.3 95 74.7
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 3.9e-28 129.8 77 77.9
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.6e-27 125.9 215 36.3
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.4e-25 121.3 224 35.3
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.4e-24 116.3 139 45.3
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 9.9e-24 115.2 222 33.3
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 2.9e-23 113.6 83 62.7
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.9e-23 113.6 176 35.8
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 3.8e-23 113.2 167 42.5
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 1.9e-22 110.9 138 46.4
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-20 104.8 222 32.4
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 2.0e-16 90.9 180 31.1
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 2.3e-12 77.4 200 29.5
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 8.1e-10 68.9 70 52.9
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 1.5e-08 64.7 59 54.2
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.8e-08 62.8 105 35.2
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 3.2e-06 57.0 51 54.9


User provided reference genes

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