Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 1.5e-245 852.4 427 100.0
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 9.8e-242 839.7 427 97.7
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 1.3e-238 829.3 428 96.7
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 8.0e-236 820.1 430 95.6
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 2.4e-232 808.5 432 93.3
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 9.2e-232 806.6 429 93.9
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 9.5e-229 796.6 432 91.9
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 8.0e-228 793.5 432 91.4
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-226 789.6 428 92.1
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 4.4e-226 787.7 431 91.9
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 5.8e-226 787.3 428 91.8
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.3e-225 786.2 444 89.4
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 1.7e-225 785.8 433 91.2
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 8.3e-225 783.5 428 91.4
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 3.2e-224 781.6 428 91.4
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 6.6e-222 773.9 431 90.5
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 3.6e-220 768.1 438 88.8
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 2.9e-217 758.4 403 93.1
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 6.4e-217 757.3 494 79.4
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 2.4e-211 738.8 430 85.3
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.1e-198 694.5 430 80.2
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 5.1e-198 694.5 426 81.7
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.9e-197 692.6 403 84.9
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 2.1e-196 689.1 403 84.1
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.4e-195 685.6 395 85.1
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 2.4e-195 685.6 395 85.1
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 4.0e-195 684.9 430 80.2
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 4.0e-195 684.9 404 82.9
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 6.9e-195 684.1 403 83.9
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 1.2e-194 683.3 379 87.9
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.2e-194 683.3 395 85.1
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 1.2e-194 683.3 429 79.3
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.5e-194 682.9 382 87.2
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 2.0e-194 682.6 402 83.8
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 9.9e-194 680.2 430 79.5
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 1.7e-193 679.5 396 83.3
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.7e-193 679.5 429 80.0
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 2.2e-193 679.1 433 78.3
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 2.2e-193 679.1 431 78.9
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 2.2e-193 679.1 399 84.0
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 2.2e-193 679.1 431 80.0
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 2.9e-193 678.7 425 79.3
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 2.9e-193 678.7 431 79.8
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 3.8e-193 678.3 432 79.9
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 4.9e-193 677.9 413 79.7
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 6.4e-193 677.6 429 79.3
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 8.4e-193 677.2 412 81.3
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 8.4e-193 677.2 430 79.3
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 1.1e-192 676.8 431 78.7
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 1.4e-192 676.4 434 78.1
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.4e-192 676.4 420 79.3
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.4e-192 676.4 429 79.3
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.9e-192 676.0 410 80.0
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 2.4e-192 675.6 434 77.9
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 2.4e-192 675.6 431 79.6
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.4e-192 675.6 422 78.7
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 3.2e-192 675.2 432 78.2
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 4.2e-192 674.9 397 82.9
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 4.2e-192 674.9 431 79.6
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 5.4e-192 674.5 386 84.5
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 5.4e-192 674.5 406 81.3
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 7.1e-192 674.1 383 85.1
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 9.3e-192 673.7 386 83.9
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.2e-191 673.3 386 83.9
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 2.1e-191 672.5 430 78.8
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 2.7e-191 672.2 396 83.1
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 2.7e-191 672.2 437 78.3
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 4.6e-191 671.4 433 78.1
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 6.0e-191 671.0 435 77.7
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 7.9e-191 670.6 397 82.9
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.0e-190 670.2 397 82.6
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 1.0e-190 670.2 399 82.2
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 2.3e-190 669.1 420 79.0
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 5.1e-190 667.9 396 82.6
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 5.1e-190 667.9 429 78.8
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 6.7e-190 667.5 395 82.5
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.1e-189 666.8 407 81.1
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 1.1e-189 666.8 435 77.0
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.5e-189 665.6 397 82.4
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 3.3e-189 665.2 427 78.2
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 3.3e-189 665.2 385 83.4
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 9.6e-189 663.7 430 77.4
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 1.3e-188 663.3 419 78.8
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 1.3e-188 663.3 407 80.8
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.3e-188 663.3 407 80.8
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 1.3e-188 663.3 404 80.4
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.8e-188 662.1 403 80.1
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 3.7e-188 661.8 407 81.1
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 4.8e-188 661.4 386 83.2
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 8.1e-188 660.6 430 77.0
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 1.1e-187 660.2 434 76.7
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 1.8e-187 659.4 427 78.5
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 2.4e-187 659.1 367 86.4
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 3.1e-187 658.7 430 77.0
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 4.0e-187 658.3 430 77.0
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 6.9e-187 657.5 413 79.4
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 6.9e-187 657.5 403 79.9
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.0e-186 656.0 432 75.5
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 3.8e-185 651.7 432 75.5
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 6.4e-185 651.0 406 79.1
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.9e-184 649.4 368 85.6
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 7.1e-184 647.5 421 77.4
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 9.3e-184 647.1 432 77.3
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.3e-182 643.3 365 86.3
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.8e-179 632.9 367 82.6
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 2.6e-178 629.0 434 71.0
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 3.8e-177 625.2 429 71.3
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.4e-176 623.2 422 72.7
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 7.1e-176 620.9 433 74.8
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.2e-175 620.2 431 74.9
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 1.8e-174 616.3 422 76.5
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 4.8e-172 608.2 394 74.1
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 3.1e-171 605.5 389 76.9
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 4.2e-168 595.1 383 78.3
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 3.9e-166 588.6 380 77.9
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 2.1e-159 566.2 386 69.2
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 3.6e-159 565.5 379 72.3
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 5.3e-155 551.6 442 68.3
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 4.7e-151 538.5 335 76.1
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.4e-150 537.0 383 71.0
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.8e-150 536.6 368 70.1
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.3e-150 536.2 341 80.1
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 2.4e-147 526.2 386 65.3
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 1.5e-141 506.9 299 84.6
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 8.8e-134 481.1 288 80.9
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 3.5e-106 389.4 267 74.9
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 2.9e-100 369.8 280 68.2
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 1.5e-69 267.7 352 40.9
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 1.7e-68 264.2 333 41.4
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 2.8e-63 246.9 171 74.9
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 9.7e-48 195.3 118 81.4
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 5.0e-44 183.0 113 74.3
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 1.2e-37 161.8 84 91.7
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 2.2e-36 157.5 84 88.1
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.2e-29 135.2 84 75.0
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.8e-25 121.3 125 58.4
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 2.8e-23 114.0 57 87.7
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 1.2e-21 108.6 62 83.9
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.3e-20 105.1 80 65.0
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 7.2e-19 99.4 75 76.0
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.5e-16 91.7 272 30.5
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 2.8e-15 87.4 78 61.5
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 8.6e-12 75.9 65 63.1
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 1.0e-09 68.9 40 75.0


User provided reference genes

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