Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.2e-186 656.4 330 100.0
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 8.5e-185 650.2 330 98.8
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 8.8e-174 613.6 331 94.0
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 1.2e-173 613.2 320 96.2
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 9.7e-173 610.1 336 92.0
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 6.3e-172 607.4 334 91.3
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 2.2e-164 582.4 334 89.2
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 2.4e-163 578.9 331 88.5
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.0e-158 563.5 324 88.9
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.0e-158 563.5 324 88.9
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 8.9e-158 560.5 337 86.6
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 3.7e-156 555.1 334 84.7
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 9.2e-155 550.4 331 83.7
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 3.5e-138 495.4 335 75.5
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 3.9e-137 491.9 334 74.9
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 9.5e-136 487.3 333 74.8
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 9.5e-136 487.3 331 75.5
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 4.0e-134 481.9 331 74.6
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 8.9e-134 480.7 331 72.5
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 4.4e-133 478.4 334 72.2
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 7.5e-133 477.6 331 72.2
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.9e-132 475.7 331 71.6
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 4.9e-132 474.9 333 72.7
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 8.3e-132 474.2 333 72.4
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.1e-131 473.8 333 72.1
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 2.4e-131 472.6 335 72.8
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 3.2e-131 472.2 333 71.8
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 4.1e-131 471.9 340 72.4
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 5.4e-131 471.5 335 71.3
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 7.1e-131 471.1 334 71.9
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.2e-130 470.3 333 71.8
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.6e-130 469.9 333 71.8
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 6.0e-130 468.0 333 72.1
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.7e-129 466.5 332 72.3
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.3e-129 466.1 333 70.9
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 6.6e-129 464.5 334 71.6
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.5e-128 463.4 333 70.0
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 1.5e-128 463.4 332 73.8
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.5e-128 463.4 318 72.6
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 3.3e-128 462.2 340 72.4
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 9.5e-128 460.7 334 70.7
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.6e-127 459.9 325 72.9
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 6.2e-127 458.0 333 71.5
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 6.2e-127 458.0 333 70.3
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 6.2e-127 458.0 333 69.1
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 5.2e-126 454.9 334 69.5
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 8.9e-126 454.1 333 69.4
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.5e-125 453.4 325 71.4
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 3.4e-125 452.2 334 68.0
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 4.4e-125 451.8 334 68.6
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 5.8e-125 451.4 333 70.0
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 5.8e-125 451.4 335 69.0
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.3e-124 450.3 338 68.6
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.3e-124 450.3 334 68.6
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.2e-124 449.5 335 69.6
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.9e-124 449.1 339 69.9
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 8.4e-124 447.6 334 70.4
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 8.4e-124 447.6 335 68.4
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.1e-123 447.2 334 69.2
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.4e-123 446.8 340 67.6
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.4e-123 446.8 340 67.6
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 2.4e-123 446.0 338 68.9
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 7.1e-123 444.5 336 69.3
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 9.2e-123 444.1 340 68.5
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.1e-122 443.0 337 68.8
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.7e-122 442.6 331 68.3
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.3e-121 440.3 336 68.2
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.7e-121 439.9 336 68.5
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 2.3e-121 439.5 336 68.5
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.9e-121 438.7 336 68.5
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.9e-121 438.7 334 66.5
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 5.1e-121 438.3 335 68.7
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.5e-120 436.8 337 68.2
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.9e-120 436.4 331 68.0
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.5e-120 436.0 336 68.5
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 7.3e-120 434.5 342 67.3
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 7.3e-120 434.5 334 66.2
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 4.8e-119 431.8 335 67.8
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 4.8e-119 431.8 337 67.4
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.8e-118 429.9 380 61.1
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.9e-118 427.9 355 63.4
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 2.0e-117 426.4 335 66.6
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 2.6e-117 426.0 337 66.2
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 3.4e-117 425.6 339 66.1
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 3.4e-117 425.6 337 65.6
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 4.4e-117 425.2 341 66.9
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.3e-116 423.7 329 68.1
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 2.9e-116 422.5 337 65.3
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.9e-116 421.8 332 65.1
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 7.1e-115 417.9 331 65.6
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.2e-114 417.2 335 64.8
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.0e-113 414.1 346 66.8
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 6.6e-113 411.4 343 64.4
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 2.5e-112 409.5 334 63.2
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 5.6e-112 408.3 341 65.7
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.6e-111 406.8 340 63.2
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.1e-110 404.1 340 62.6
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 4.0e-110 402.1 338 63.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 5.3e-110 401.7 339 63.1
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-109 400.2 355 60.0
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-109 400.2 355 60.0
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.1e-104 384.0 363 60.6
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.5e-104 383.6 263 73.8
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 2.5e-104 382.9 330 62.1
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 5.6e-104 381.7 332 60.2
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 4.8e-103 378.6 353 60.1
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 8.1e-103 377.9 353 59.5
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.4e-99 367.1 356 59.8
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 4.2e-99 365.5 342 58.2
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 9.3e-99 364.4 352 57.1
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 2.1e-98 363.2 359 58.2
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 4.6e-98 362.1 330 57.9
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.5e-96 357.1 282 67.0
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 7.4e-96 354.8 332 56.6
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.6e-90 337.0 319 57.7
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 3.8e-84 315.8 322 56.8
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.0e-81 306.2 230 66.1
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.2e-69 267.7 349 46.4
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.5e-69 267.3 245 62.0
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.6e-69 266.5 212 63.7
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 8.5e-68 261.5 252 57.1
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 2.4e-62 243.4 266 55.6
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 5.3e-62 242.3 186 68.3
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 5.0e-60 235.7 362 43.4
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 1.9e-59 233.8 190 63.2
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.1e-58 230.3 354 43.8
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 3.6e-58 229.6 357 43.7
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 6.8e-57 225.3 381 41.2
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 8.5e-52 208.4 218 55.0
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.4e-49 201.1 356 41.3
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 3.4e-48 196.4 225 51.6
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 3.4e-40 169.9 174 47.7
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 9.2e-38 161.8 364 34.1
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 9.5e-35 151.8 375 34.1
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 4.0e-33 146.4 355 36.1
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.6e-28 129.0 118 58.5
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 5.2e-25 119.4 136 47.1
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 4.4e-24 116.3 367 30.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 9.8e-24 115.2 92 58.7
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.2e-23 114.0 88 63.6
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.2e-22 110.2 92 56.5
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 4.1e-22 109.8 106 51.9
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 4.6e-21 106.3 148 43.9
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.2e-18 98.2 103 54.4
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 8.1e-18 95.5 126 44.4
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 2.9e-15 87.0 55 70.9
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.9e-15 86.3 64 65.6
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.4e-14 84.0 134 36.6
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 9.2e-14 82.0 40 92.5
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 3.5e-13 80.1 71 52.1
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 6.0e-13 79.3 308 29.2
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.7e-12 77.8 81 56.8
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.4e-09 67.4 158 32.9
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 9.9e-08 62.0 43 65.1
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-07 61.6 53 52.8
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 3.8e-07 60.1 168 28.6


User provided reference genes

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