Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 2.7e-289 998.0 531 100.0
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 5.1e-272 940.6 531 92.1
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 4.4e-268 927.5 532 91.0
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 8.4e-251 870.2 534 84.5
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 1.2e-249 866.3 536 84.7
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 2.1e-249 865.5 529 83.9
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 1.0e-240 836.6 534 81.1
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 1.8e-240 835.9 534 81.1
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 5.7e-239 830.9 534 80.3
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 6.9e-237 823.9 533 79.5
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 9.0e-237 823.5 534 79.4
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 5.1e-232 807.7 532 78.2
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 3.7e-222 775.0 533 73.5
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 9.4e-218 760.4 533 80.3
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 2.5e-186 656.0 524 64.9
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.5e-178 629.4 522 63.8
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 1.2e-177 627.1 531 65.3
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 4.7e-177 625.2 540 61.1
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 4.7e-177 625.2 522 60.7
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 4.7e-177 625.2 542 61.1
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 1.8e-176 623.2 525 61.5
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 8.9e-176 620.9 540 60.7
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 5.8e-175 618.2 523 62.9
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 1.0e-171 607.4 523 63.5
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.3e-171 607.1 546 61.4
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 5.0e-171 605.1 529 60.9
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 5.0e-171 605.1 529 60.9
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.9e-170 603.2 527 60.7
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 2.5e-170 602.8 544 61.6
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 7.1e-165 584.7 528 57.8
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.6e-164 583.6 536 59.1
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 2.7e-164 582.8 523 57.6
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 1.3e-163 580.5 528 57.6
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.3e-163 580.5 533 57.8
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 3.0e-163 579.3 523 57.7
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 3.0e-163 579.3 536 59.0
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.2e-161 573.9 536 58.6
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 2.3e-160 569.7 533 56.8
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 3.1e-160 569.3 529 57.7
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 5.2e-160 568.5 526 57.6
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 4.4e-159 565.5 529 57.5
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 8.4e-158 561.2 521 57.0
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 8.4e-158 561.2 521 57.0
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 1.1e-157 560.8 528 59.7
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.4e-157 560.5 483 59.6
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 1.9e-157 560.1 528 59.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 4.1e-157 558.9 531 56.9
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 1.6e-156 557.0 533 57.0
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 6.0e-156 555.1 539 59.7
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 6.0e-156 555.1 527 59.4
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 7.8e-156 554.7 532 55.5
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 2.3e-155 553.1 532 58.3
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 3.0e-155 552.7 541 59.3
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 3.9e-155 552.4 526 60.1
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 3.3e-154 549.3 530 59.1
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 3.3e-154 549.3 530 59.1
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 4.3e-154 548.9 518 59.8
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 5.6e-154 548.5 541 58.6
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 7.3e-154 548.1 526 59.7
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 7.3e-154 548.1 518 59.8
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 2.1e-153 546.6 541 58.6
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 3.6e-153 545.8 526 59.3
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 4.7e-153 545.4 540 58.1
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 6.2e-153 545.0 520 60.2
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 6.2e-153 545.0 518 59.8
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 8.1e-153 544.7 539 58.6
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 8.1e-153 544.7 545 58.5
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 8.1e-153 544.7 518 59.5
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 1.8e-152 543.5 526 55.3
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 9.9e-151 537.7 535 54.2
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.7e-150 537.0 533 56.8
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 2.2e-150 536.6 551 54.1
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.6e-148 528.9 528 54.7
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 5.6e-146 521.9 525 56.0
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 6.2e-145 518.5 520 56.0
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 6.9e-144 515.0 533 51.8
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 2.6e-143 513.1 526 56.5
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.1e-141 507.7 535 51.4
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 2.4e-141 506.5 528 54.5
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 5.4e-141 505.4 535 51.6
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 1.9e-138 496.9 520 54.8
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 1.3e-137 494.2 521 54.9
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 2.4e-136 490.0 530 54.0
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 9.9e-135 484.6 533 51.0
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 1.3e-131 474.2 513 50.5
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 3.0e-131 473.0 531 52.4
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.5e-130 470.7 531 52.4
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 1.5e-130 470.7 530 51.9
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.5e-130 469.9 527 49.9
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 4.3e-130 469.2 526 52.9
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 6.9e-128 461.8 495 53.3
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 4.5e-127 459.1 526 51.3
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 6.5e-126 455.3 528 50.6
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 6.5e-126 455.3 528 50.8
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 8.7e-123 444.9 531 51.6
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 4.5e-119 432.6 524 47.1
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 7.6e-119 431.8 517 49.9
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 1.4e-117 427.6 524 46.0
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 1.9e-117 427.2 529 50.1
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 6.7e-115 418.7 451 55.2
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 6.3e-113 412.1 518 47.1
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 6.9e-112 408.7 531 46.0
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 1.2e-111 407.9 517 49.3
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 7.2e-109 398.7 329 64.1
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 1.3e-105 387.9 531 44.4
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 2.2e-105 387.1 525 42.9
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 3.8e-102 376.3 504 45.8
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 3.7e-81 306.6 495 38.0
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 1.3e-78 298.1 401 45.1
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 1.8e-75 287.7 515 39.6
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 2.3e-75 287.3 520 37.3
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 3.5e-71 273.5 332 43.7
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 1.0e-70 271.9 279 51.6
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 5.0e-70 269.6 388 46.1
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 1.3e-65 255.0 502 34.5
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 1.0e-62 245.4 529 33.5
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 9.5e-61 238.8 342 44.2
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 2.8e-52 210.7 401 32.9
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 2.0e-50 204.5 522 30.5
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 1.7e-41 174.9 128 75.0
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 7.1e-40 169.5 180 50.0
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.7e-38 164.9 219 46.6
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 3.0e-38 164.1 540 29.1
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 3.9e-38 163.7 348 33.3
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 6.6e-38 162.9 237 45.1
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 4.3e-37 160.2 166 60.2
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 7.3e-37 159.5 166 60.2
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 1.7e-33 148.3 103 75.7
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.1e-27 127.5 100 65.0
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 3.1e-27 127.5 99 59.6
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 2.2e-17 94.7 143 42.7
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 1.5e-13 82.0 69 63.8
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 9.6e-13 79.3 63 58.7
CBR_g31026 Chara braunii HOM05D005544 ORTHO05D007303 1.2e-10 72.4 270 24.4
CDE03G0436 Ceratophyllum demersum HOM05D000684 ORTHO05D000688 1.5e-10 72.0 222 25.7
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 3.4e-10 70.9 50 66.0
CDE04G2061 Ceratophyllum demersum HOM05D000684 ORTHO05D000688 4.5e-10 70.5 223 25.1
Zm00001eb361760 Zea mays HOM05D000684 ORTHO05D000688 8.4e-09 66.2 234 25.2
Pp3c1_24850 Physcomitrium patens HOM05D000684 ORTHO05D000688 2.5e-08 64.7 222 25.2
Oeu051308.2 Olea europaea HOM05D005151 ORTHO05D006322 3.2e-08 64.3 117 34.2
Lsat_1_v5_gn_9_98081 Lactuca sativa HOM05D000684 ORTHO05D000688 7.1e-08 63.2 164 26.2
Lalb_Chr20g0109651 Lupinus albus HOM05D000684 ORTHO05D000688 9.3e-08 62.8 222 23.0
Eucgr.F03314 Eucalyptus grandis HOM05D000684 ORTHO05D000688 1.6e-07 62.0 236 24.2
Potri.011G119500 Populus trichocarpa HOM05D000684 ORTHO05D000688 1.6e-07 62.0 222 24.8
PGSC0003DMG400003474 Solanum tuberosum HOM05D005544 ORTHO05D003203 2.1e-07 61.6 38 65.8
BcaB06g29558 Brassica carinata HOM05D000684 ORTHO05D000688 4.6e-07 60.5 296 23.0
Pp3c2_15860 Physcomitrium patens HOM05D000684 ORTHO05D000688 4.6e-07 60.5 222 24.3
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 4.6e-07 60.5 72 47.2
Thhalv10020057m.g Eutrema salsugineum HOM05D000684 ORTHO05D000688 6.0e-07 60.1 286 22.7
Sabra11G0103900 Salix brachista HOM05D000684 ORTHO05D000688 7.9e-07 59.7 223 24.7
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 7.9e-07 59.7 70 41.4
unitig_699.g19229 Utricularia gibba HOM05D000684 ORTHO05D000688 7.9e-07 59.7 292 25.0
ATR0693G369 Amborella trichopoda HOM05D005151 ORTHO05D006322 1.0e-06 59.3 93 31.2
arahy.Tifrunner.gnm1.ann1.20C8M4 Arachis hypogaea HOM05D005151 ORTHO05D006322 1.0e-06 59.3 115 28.7
arahy.Tifrunner.gnm1.ann1.7L7952 Arachis hypogaea HOM05D005151 ORTHO05D006322 1.0e-06 59.3 115 28.7
BcaC09g48495 Brassica carinata HOM05D000684 ORTHO05D000688 1.3e-06 58.9 320 21.2
unitig_749.g13526 Utricularia gibba HOM05D000684 ORTHO05D000688 1.3e-06 58.9 227 22.9
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.8e-06 58.5 101 38.6
TWI39G0475 Tripterygium wilfordii HOM05D000684 ORTHO05D000688 1.8e-06 58.5 226 22.6
C01p49140 Brassica napus HOM05D000684 ORTHO05D000688 2.3e-06 58.2 320 21.2
BolC1t04878H Brassica oleracea HOM05D000684 ORTHO05D000688 2.3e-06 58.2 320 21.2
A01p38650 Brassica napus HOM05D000684 ORTHO05D000688 3.0e-06 57.8 286 22.4
SHI30700 Sapria himalayana HOM05D005151 ORTHO05D006322 3.0e-06 57.8 148 35.1
GSVIVG01015149001 Vitis vinifera HOM05D005151 ORTHO05D006322 3.0e-06 57.8 114 29.8
CARHR090320 Cardamine hirsuta HOM05D000684 ORTHO05D000688 3.9e-06 57.4 286 22.4
AL3G27760 Arabidopsis lyrata HOM05D000684 ORTHO05D000688 5.1e-06 57.0 286 22.4
Oeu063536.1 Olea europaea HOM05D000684 ORTHO05D000688 5.1e-06 57.0 279 21.5
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 5.1e-06 57.0 72 44.4
Aqoxy4G00774 Aquilegia oxysepala HOM05D000684 ORTHO05D000688 6.7e-06 56.6 224 23.2
Carub.0003s1500 Capsella rubella HOM05D000684 ORTHO05D000688 6.7e-06 56.6 286 21.7
A05p34130 Brassica napus HOM05D000684 ORTHO05D000688 8.7e-06 56.2 303 22.4
Lalb_Chr25g0286351 Lupinus albus HOM05D000684 ORTHO05D000688 8.7e-06 56.2 156 23.7


User provided reference genes

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