Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 0.0e+00 1933.7 1007 100.0
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 0.0e+00 1803.5 1007 93.7
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 0.0e+00 1648.6 1007 85.0
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 0.0e+00 1645.9 1008 84.8
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 0.0e+00 1625.1 1007 84.3
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 0.0e+00 1625.1 1007 84.3
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1486.5 1030 77.2
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1486.5 1030 77.2
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1463.7 1012 76.9
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 0.0e+00 1462.6 1042 75.5
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 0.0e+00 1461.0 1012 76.8
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 0.0e+00 1433.3 1013 76.1
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1426.4 1011 76.6
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1421.0 1013 75.4
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1421.0 1013 75.4
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 0.0e+00 1412.5 958 79.3
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1409.8 1010 75.7
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 0.0e+00 1381.3 1024 75.1
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 0.0e+00 1379.8 1014 73.7
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1366.3 1019 73.7
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 0.0e+00 1366.3 1019 73.7
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 0.0e+00 1338.9 1014 72.1
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 0.0e+00 1193.3 676 89.6
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 0.0e+00 1085.1 1019 59.2
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 4.6e-306 1054.7 1029 57.7
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 2.8e-303 1045.4 1024 56.5
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 1.5e-296 1023.1 1026 56.4
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 1.9e-296 1022.7 1026 55.8
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 2.8e-295 1018.8 1022 57.4
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.3e-289 999.2 1026 55.5
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 3.0e-289 998.8 1026 55.6
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 3.9e-289 998.4 1089 54.6
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 1.9e-288 996.1 1088 54.8
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 5.6e-288 994.6 1026 55.6
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 9.6e-288 993.8 1030 56.5
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 3.2e-283 978.8 1045 55.3
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.1e-282 976.1 1045 55.3
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 8.7e-281 970.7 1024 55.0
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 5.6e-280 968.0 1059 53.1
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 4.8e-279 964.9 1109 52.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 6.2e-279 964.5 1044 54.5
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 5.3e-278 961.4 1079 52.6
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 2.9e-276 955.7 1059 53.1
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 8.4e-276 954.1 1028 54.3
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 8.4e-276 954.1 1036 54.3
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.1e-275 953.7 1103 51.8
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 6.7e-273 944.5 1134 50.9
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 2.5e-272 942.6 1050 53.4
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 2.1e-271 939.5 1060 51.9
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 3.7e-271 938.7 1115 51.1
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 4.8e-271 938.3 1030 54.2
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 4.0e-270 935.3 1027 55.1
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.6e-269 932.6 1060 52.6
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 2.6e-269 932.6 1037 53.6
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 4.5e-269 931.8 1062 51.4
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 4.5e-269 931.8 1039 52.0
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.8e-269 931.4 1042 53.7
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 9.9e-269 930.6 1099 51.0
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.4e-267 926.8 1024 53.4
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 1.9e-267 926.4 966 55.6
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 7.1e-267 924.5 1059 51.8
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 7.1e-267 924.5 1106 50.2
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 8.7e-265 917.5 1040 52.7
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 1.5e-264 916.8 1024 52.7
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 2.1e-263 912.9 1072 50.6
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.4e-262 909.4 1018 52.1
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 4.9e-260 901.7 1026 52.7
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 8.4e-260 901.0 1048 52.1
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 1.2e-258 897.1 1048 51.9
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.0e-257 894.0 1097 49.2
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 8.7e-257 891.0 1073 50.4
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.0e-252 877.5 1022 52.0
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 6.1e-250 868.2 1088 49.4
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 3.3e-248 862.4 1015 51.7
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 9.7e-248 860.9 921 54.0
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 6.9e-246 854.7 1044 51.1
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.0e-244 850.9 1021 51.0
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 1.3e-244 850.5 1024 50.1
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 5.0e-244 848.6 1038 52.0
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 6.5e-244 848.2 1030 50.8
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 9.7e-240 834.3 1114 46.5
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 2.6e-237 826.2 1036 49.6
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 3.8e-236 822.4 1073 47.5
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 1.4e-235 820.5 1023 48.9
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 5.5e-235 818.5 1016 50.9
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 5.5e-235 818.5 1007 50.9
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.7e-234 816.2 776 59.7
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.3e-233 813.1 1066 47.6
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 9.7e-232 807.7 1020 49.3
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 9.1e-230 801.2 1000 48.6
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.5e-227 793.9 1012 49.3
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 4.2e-227 792.3 1028 47.8
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.6e-226 790.4 1164 43.9
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 2.3e-225 786.6 1057 47.2
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 3.8e-220 769.2 1022 48.1
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 8.5e-220 768.1 892 52.6
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 5.5e-219 765.4 1037 47.1
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 2.7e-218 763.1 1204 41.9
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 4.7e-210 735.7 1050 45.1
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 8.9e-209 731.5 984 46.7
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 9.2e-206 721.5 1170 41.9
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.2e-205 721.1 844 50.8
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.1e-203 714.5 1004 45.6
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.8e-201 707.2 1120 42.2
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 2.6e-200 703.4 707 57.0
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 4.1e-198 696.0 1042 45.5
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 7.5e-192 675.2 628 58.6
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 5.4e-190 669.1 591 61.6
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 8.1e-186 655.2 880 46.9
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 5.6e-179 632.5 517 63.8
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.4e-174 617.1 865 45.3
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 8.1e-170 602.1 841 44.5
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 4.3e-163 579.7 842 45.4
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 5.6e-163 579.3 851 43.5
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 4.8e-162 576.2 852 43.5
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 8.7e-156 555.4 818 44.1
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 9.0e-153 545.4 418 67.5
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.9e-151 540.4 1077 39.0
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 6.9e-145 519.2 980 39.3
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 8.2e-138 495.7 363 68.6
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 3.1e-137 493.8 913 39.8
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.5e-136 490.0 362 68.5
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.2e-130 471.1 1005 36.8
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 5.0e-119 433.3 835 39.8
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 2.0e-115 421.4 355 60.3
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 2.4e-113 414.5 722 40.2
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 2.3e-108 397.9 367 58.3
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 8.3e-106 389.4 507 47.7
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 8.6e-79 299.7 332 53.9
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 2.1e-77 295.0 577 38.3
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.5e-75 288.9 474 40.5
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 4.4e-75 287.3 375 49.6
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 8.1e-69 266.5 254 55.5
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 8.6e-63 246.5 378 41.0
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 2.6e-59 235.0 299 43.5
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.8e-53 214.9 343 44.6
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.1e-49 203.0 275 44.7
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.7e-47 195.7 155 61.9
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.9e-47 194.5 179 56.4
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.1e-46 193.0 553 33.6
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.1e-46 193.0 553 33.6
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 1.3e-45 189.5 620 28.7
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 4.5e-43 181.0 113 77.9
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 5.8e-43 180.6 129 64.3
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 7.6e-43 180.3 406 37.7
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 7.6e-43 180.3 154 57.8
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.1e-40 172.2 291 38.5
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 8.7e-39 166.8 279 42.7
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 6.2e-37 160.6 194 47.9
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 9.0e-36 156.8 144 61.1
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 4.6e-32 144.4 134 58.2
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 4.3e-30 137.9 166 49.4
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 5.0e-26 124.4 75 80.0
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 5.0e-26 124.4 83 75.9
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 3.2e-25 121.7 75 78.7
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 9.3e-25 120.2 97 60.8
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 1.8e-20 105.9 73 67.1
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 1.7e-18 99.4 444 28.8
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.1e-17 96.7 427 31.6
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 4.2e-17 94.7 159 39.0
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 3.0e-15 88.6 65 64.6
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 1.5e-14 86.3 105 53.3
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 8.2e-13 80.5 68 54.4
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.1e-12 80.1 51 72.5
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 5.3e-12 77.8 64 68.8
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 9.1e-12 77.0 76 55.3
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.5e-11 76.3 100 43.0
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.9e-10 72.0 72 51.4
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 4.2e-09 68.2 50 60.0
CARHR134090 Cardamine hirsuta HOM05D000283 ORTHO05D116263 9.4e-09 67.0 50 68.0
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 1.2e-08 66.6 48 68.8
HanXRQChr09g0251551 Helianthus annuus HOM05D002494 ORTHO05D002673 1.1e-06 60.1 273 26.7
AagrBONN_evm.TU.Sc2ySwM_362.842 Anthoceros agrestis HOM05D002494 ORTHO05D002673 1.5e-06 59.7 242 27.3
Lsat_1_v5_gn_6_69301 Lactuca sativa HOM05D002494 ORTHO05D002673 1.5e-06 59.7 312 25.0
CDE04G2572 Ceratophyllum demersum HOM05D002494 ORTHO05D002673 2.0e-06 59.3 241 26.1
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 7.4e-06 57.4 241 24.9


User provided reference genes

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