Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 2401.3 1317 100.0
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 2325.1 1317 97.0
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 2283.4 1317 92.0
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 2204.9 1317 88.5
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 2203.3 1317 91.1
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 2137.1 1317 88.5
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 2108.6 1340 86.8
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 2103.6 1332 87.1
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 2103.6 1359 85.7
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 2103.2 1332 87.1
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 2041.2 1317 81.9
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 2001.9 1343 80.2
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1923.3 1317 76.8
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1898.2 1317 75.7
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1880.9 1317 75.2
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1876.3 1303 76.1
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1835.5 1317 72.9
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1827.0 1317 72.9
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1812.0 1317 72.6
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1784.2 1549 66.6
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1780.0 1317 71.6
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1778.8 1317 71.1
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1777.7 1317 72.1
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1761.9 1321 71.6
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1759.2 1317 69.9
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1756.1 1317 70.0
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1749.2 1317 70.8
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1741.9 1317 70.2
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1737.6 1317 69.6
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1733.8 1317 69.8
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1728.0 1318 71.5
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1728.0 1317 70.0
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1724.5 1317 69.0
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1722.2 1365 68.3
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1719.9 1317 69.1
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1708.7 1431 64.8
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1702.2 1317 68.0
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1671.4 1317 68.1
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1663.7 1317 66.1
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1659.4 1317 67.2
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1657.5 1317 67.2
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1656.7 1317 67.3
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1656.7 1370 65.3
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1634.4 1317 66.6
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1631.3 1317 65.8
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1626.3 1318 66.2
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1622.1 1317 65.6
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1617.8 1317 65.8
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1617.8 1311 65.9
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1615.1 1317 66.4
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1612.8 1317 65.8
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1612.4 1210 70.3
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1600.1 1317 65.2
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1597.4 1317 64.5
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1595.1 1325 64.4
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1585.9 1317 65.6
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1584.7 1210 69.1
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1580.5 1317 65.8
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1568.1 1261 66.2
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1563.1 1337 63.4
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1548.9 1256 66.4
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1547.3 1318 64.5
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1541.6 1318 64.3
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1541.2 1318 64.3
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1535.0 1303 63.4
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1529.6 1401 60.8
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1517.7 1317 62.7
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1508.0 1317 61.7
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1507.7 1303 61.6
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1503.4 1317 61.5
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1497.6 1317 61.3
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1497.3 1318 62.4
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1495.7 1317 61.6
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1470.3 1370 62.4
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1459.1 1304 61.2
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 0.0e+00 1260.7 743 89.2
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1221.1 1317 52.2
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1159.8 767 81.4
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1135.9 1318 48.0
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1111.7 1062 56.8
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1078.2 1314 46.8
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 5.2e-310 1068.1 790 76.1
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 9.6e-288 994.2 1318 44.8
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.8e-284 982.2 1025 54.3
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 1.2e-282 977.2 1059 51.7
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 1.9e-280 969.9 902 58.6
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.2e-277 960.7 759 66.5
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.0e-268 931.0 1252 47.8
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.9e-265 919.1 888 56.3
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 7.7e-253 878.2 1103 48.3
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 2.6e-245 853.2 669 69.1
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.6e-237 827.4 631 69.1
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.6e-237 827.4 761 58.7
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 7.7e-237 825.1 631 69.1
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 3.6e-234 816.2 728 58.9
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 1.3e-231 807.7 729 59.4
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 9.1e-230 801.6 594 70.2
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 9.1e-230 801.6 594 70.2
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 6.1e-218 762.3 631 65.6
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 1.2e-210 738.0 1277 37.5
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 5.6e-203 712.6 558 69.4
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 7.3e-195 685.6 735 54.6
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 9.2e-182 642.1 593 61.2
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.6e-162 578.2 1387 32.2
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 2.1e-157 561.2 394 79.9
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.4e-153 548.5 350 80.0
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.1e-147 528.9 322 87.9
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 3.3e-147 527.3 436 66.1
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.3e-146 525.4 375 72.3
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.8e-138 497.7 431 63.6
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 8.2e-138 496.1 524 55.5
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.8e-137 495.0 1391 29.8
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.9e-135 487.6 296 83.8
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.4e-134 485.3 1338 29.7
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 2.7e-125 454.5 457 57.1
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 5.3e-121 440.3 1350 28.3
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.5e-118 432.2 222 95.9
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.6e-117 428.7 244 88.1
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 3.7e-114 417.5 264 81.4
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 6.5e-111 406.8 224 89.7
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 7.2e-110 403.3 853 36.3
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.8e-100 372.1 187 100.0
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 4.4e-91 340.9 223 79.4
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.9e-90 338.2 408 49.5
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 6.6e-71 273.9 226 61.5
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-63 249.6 230 64.8
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 5.1e-63 247.7 126 95.2
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.8e-53 214.5 140 80.7
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.1e-49 203.4 139 78.4
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 1.6e-45 189.5 195 52.3
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.4e-44 186.4 170 58.8
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 8.7e-39 167.2 165 55.2
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.8e-37 161.4 87 92.0
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.9e-34 152.1 106 75.5
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 2.1e-32 146.0 72 93.1
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 5.1e-31 141.4 173 46.8
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 3.4e-27 128.6 77 92.2
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 1.0e-23 117.1 114 54.4
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.9e-22 112.8 100 63.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 9.7e-22 110.5 64 85.9
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.5e-19 103.2 64 76.6
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 7.7e-19 100.9 106 55.7
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 2.2e-13 82.8 260 30.0
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 3.7e-13 82.0 53 73.6
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 8.2e-13 80.9 70 60.0
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 8.2e-13 80.9 157 35.7
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 8.5e-10 70.9 91 49.5
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 4.2e-09 68.6 63 61.9
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 1.0e-07 63.9 61 62.3
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 1.4e-07 63.5 56 66.1
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 2.6e-06 59.3 33 87.9


User provided reference genes

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