Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.9e-33 145.2 71 100.0
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 2.0e-27 125.2 71 91.5
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.0e-27 125.2 71 91.5
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.1e-25 119.4 71 85.9
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.9e-25 118.6 71 84.5
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 2.5e-25 118.2 71 85.9
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 5.6e-25 117.1 71 84.5
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 6.2e-24 113.6 71 80.3
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 5.2e-23 110.5 68 79.4
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 8.9e-23 109.8 68 79.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 8.9e-23 109.8 68 79.4
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 3.4e-22 107.8 71 76.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.4e-22 107.8 68 77.9
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 4.4e-22 107.5 66 78.8
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 4.4e-22 107.5 66 78.8
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 5.8e-22 107.1 71 76.1
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.9e-21 104.0 71 70.4
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.0e-20 100.1 68 76.5
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.7e-18 95.5 68 67.6
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 6.6e-18 93.6 70 62.9
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 6.6e-18 93.6 70 62.9
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 6.6e-18 93.6 70 62.9
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.5e-17 92.4 69 63.8
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.5e-17 92.4 68 66.2
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.9e-17 92.0 66 66.7
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 3.3e-17 91.3 68 64.7
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 4.3e-17 90.9 68 64.7
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 4.3e-17 90.9 68 64.7
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 5.6e-17 90.5 68 64.7
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 5.6e-17 90.5 68 64.7
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 9.5e-17 89.7 68 66.2
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.6e-16 89.0 68 67.6
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.6e-16 89.0 68 60.3
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.6e-16 87.8 68 58.8
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 3.6e-16 87.8 68 63.2
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 6.2e-16 87.0 68 61.8
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 6.2e-16 87.0 67 65.7
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 8.1e-16 86.7 67 61.2
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 8.1e-16 86.7 68 61.8
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 8.1e-16 86.7 68 60.3
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 8.1e-16 86.7 68 58.8
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.1e-15 86.3 68 55.9
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.4e-15 85.9 69 59.4
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.8e-15 85.5 67 58.2
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.8e-15 85.5 68 60.3
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 2.3e-15 85.1 66 59.1
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 3.1e-15 84.7 67 55.2
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 3.1e-15 84.7 64 62.5
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 4.0e-15 84.3 68 58.8
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 4.0e-15 84.3 68 55.9
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 4.0e-15 84.3 68 60.3
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.8e-15 83.6 66 59.1
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.8e-15 83.6 66 59.1
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 6.8e-15 83.6 70 55.7
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 8.9e-15 83.2 67 56.7
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.2e-14 82.8 68 55.9
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.5e-14 82.4 64 57.8
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.0e-14 82.0 66 54.5
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-14 81.6 66 59.1
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.6e-14 81.6 66 59.1
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.4e-14 81.3 67 59.7
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.4e-14 81.3 66 60.6
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.4e-14 80.9 67 59.7
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 5.8e-14 80.5 64 59.4
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 7.5e-14 80.1 67 58.2
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 7.5e-14 80.1 67 59.7
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 7.5e-14 80.1 66 53.0
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 7.5e-14 80.1 61 60.7
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 7.5e-14 80.1 67 55.2
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 9.9e-14 79.7 66 56.1
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 9.9e-14 79.7 67 52.2
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.7e-13 79.0 66 53.0
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.7e-13 79.0 66 54.5
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.2e-13 78.6 64 57.8
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 2.2e-13 78.6 64 57.8
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.9e-13 78.2 67 58.2
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 2.9e-13 78.2 67 53.7
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.9e-13 78.2 66 59.1
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 2.9e-13 78.2 67 53.7
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.7e-13 77.8 66 56.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.7e-13 77.8 68 51.5
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.7e-13 77.8 68 50.0
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 3.7e-13 77.8 66 54.5
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.7e-13 77.8 69 52.2
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 4.9e-13 77.4 66 57.6
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.9e-13 77.4 66 59.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 6.4e-13 77.0 68 50.0
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 6.4e-13 77.0 67 53.7
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.4e-13 77.0 66 51.5
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 8.3e-13 76.6 66 57.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.1e-12 76.3 68 50.0
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.1e-12 76.3 64 56.2
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.1e-12 76.3 64 56.2
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-12 76.3 66 56.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.1e-12 76.3 65 56.9
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.4e-12 75.1 67 52.2
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.1e-12 74.3 61 57.4
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.4e-12 73.9 67 50.7
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 7.1e-12 73.6 66 50.0
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 9.2e-12 73.2 66 50.0
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 9.2e-12 73.2 66 50.0
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 9.2e-12 73.2 66 50.0
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 9.2e-12 73.2 66 51.5
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.2e-11 72.8 67 52.2
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-11 72.4 69 52.2
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.6e-11 72.4 66 45.5
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.6e-11 72.4 66 45.5
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.1e-11 72.0 62 54.8
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 2.1e-11 72.0 64 56.2
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 3.5e-11 71.2 66 48.5
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 3.5e-11 71.2 65 49.2
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.6e-11 70.9 64 43.8
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 4.6e-11 70.9 67 49.3
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 4.6e-11 70.9 66 43.9
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 7.8e-11 70.1 66 47.0
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 7.8e-11 70.1 64 43.8
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 7.8e-11 70.1 64 54.7
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.7e-10 68.9 68 50.0
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-10 68.9 60 55.0
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.6e-10 67.0 61 50.8
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.6e-10 67.0 60 51.7
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 6.6e-10 67.0 60 53.3
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 8.6e-10 66.6 52 51.9
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.6e-10 66.6 66 50.0
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 8.6e-10 66.6 62 43.5
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.9e-09 65.5 60 53.3
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.9e-09 65.5 66 45.5
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.9e-09 65.5 66 50.0
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.3e-09 64.7 59 52.5
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.3e-09 64.7 60 51.7
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.5e-09 63.2 60 51.7
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.6e-08 62.4 66 40.9
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 2.8e-08 61.6 52 46.2
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.8e-08 61.6 64 48.4
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 3.6e-08 61.2 66 40.9
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-08 61.2 58 50.0
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.7e-08 60.8 60 48.3
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.1e-07 59.7 66 42.4
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 2.0e-06 55.5 66 36.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 7.6e-06 53.5 68 33.8


User provided reference genes

Program Settings