Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 0.0e+00 1106.7 586 100.0
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 2.5e-288 995.0 586 88.6
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 1.5e-280 969.1 587 85.7
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 5.2e-278 960.7 586 85.8
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 5.2e-270 934.1 591 84.1
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 5.2e-270 934.1 591 84.1
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 5.2e-270 934.1 591 84.1
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.2e-269 932.9 618 80.6
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 6.4e-268 927.2 588 83.3
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 3.5e-266 921.4 591 83.1
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 2.3e-265 918.7 597 80.9
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 2.3e-265 918.7 591 82.9
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 2.9e-260 901.7 588 82.5
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 3.1e-238 828.6 592 75.3
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 4.3e-224 781.6 567 71.1
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 5.7e-224 781.2 567 71.1
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.7e-223 778.5 567 70.9
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 9.0e-222 773.9 570 71.9
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 3.4e-221 771.9 569 71.4
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.0e-220 770.4 575 70.6
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 5.5e-219 764.6 569 70.7
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 2.7e-218 762.3 564 71.5
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 4.6e-218 761.5 564 70.0
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 3.9e-217 758.4 567 70.7
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 5.7e-216 754.6 571 69.5
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 7.4e-216 754.2 586 68.6
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.3e-215 753.4 567 70.7
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 3.7e-215 751.9 574 68.6
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.1e-214 750.4 576 67.9
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.1e-214 750.4 576 69.8
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 1.8e-214 749.6 567 70.5
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.8e-214 749.6 569 69.2
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 2.4e-214 749.2 574 67.8
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 2.4e-214 749.2 567 70.0
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 4.1e-214 748.4 566 69.4
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 4.5e-213 745.0 566 69.3
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 4.5e-213 745.0 568 68.5
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 4.5e-213 745.0 568 70.4
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 5.9e-213 744.6 564 69.3
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 1.0e-212 743.8 570 69.1
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 3.8e-212 741.9 567 69.1
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 3.8e-212 741.9 590 68.5
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.8e-212 741.9 580 68.1
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 3.8e-212 741.9 564 69.3
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 5.0e-212 741.5 564 69.3
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 6.5e-212 741.1 563 69.6
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.4e-211 740.0 564 68.4
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 1.4e-211 740.0 564 68.8
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.2e-211 738.4 571 68.0
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 7.2e-211 737.6 565 69.0
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.6e-210 736.5 578 69.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.1e-210 736.1 569 68.4
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 1.0e-209 733.8 578 68.9
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.4e-209 733.4 583 66.9
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.8e-209 733.0 579 67.0
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 8.8e-209 730.7 576 67.5
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 2.6e-208 729.2 570 67.2
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 3.3e-208 728.8 561 69.2
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.1e-206 723.8 572 68.2
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 4.1e-206 721.8 572 67.7
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.0e-204 717.2 580 66.6
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 2.9e-204 715.7 570 66.1
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.2e-203 712.2 572 66.1
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 4.2e-203 711.8 573 65.6
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 4.2e-203 711.8 592 64.0
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 7.2e-203 711.1 572 65.7
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 9.4e-203 710.7 568 65.3
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.4e-203 710.7 572 65.9
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.2e-202 710.3 572 65.9
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.2e-202 710.3 583 66.9
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.6e-202 709.9 583 66.7
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 3.6e-202 708.8 576 66.0
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 4.7e-202 708.4 564 67.6
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 6.1e-202 708.0 569 67.8
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 7.5e-200 701.0 585 66.0
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 7.5e-200 701.0 590 65.8
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.8e-198 696.4 557 66.8
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.4e-198 696.0 599 62.9
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 4.1e-198 695.3 577 64.1
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 5.3e-198 694.9 543 67.8
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.6e-197 693.3 671 58.9
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 2.7e-197 692.6 586 64.7
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.5e-197 691.8 559 66.4
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 5.9e-197 691.4 583 63.6
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.2e-196 689.5 586 64.2
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 8.5e-196 687.6 586 64.2
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.1e-194 682.9 582 63.4
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 3.6e-194 682.2 600 62.5
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 5.7e-192 674.9 565 64.2
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.2e-191 672.9 555 63.4
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 2.2e-191 672.9 645 58.3
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.2e-189 667.2 571 62.9
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 3.8e-188 662.1 509 69.0
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.5e-187 660.2 572 62.8
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 2.1e-186 656.4 567 63.5
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.8e-186 656.0 597 63.3
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 4.4e-184 648.7 516 66.5
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 6.3e-183 644.8 570 63.0
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.0e-181 639.8 541 65.4
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.9e-180 636.0 549 61.2
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 8.6e-180 634.4 555 63.1
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 7.3e-179 631.3 521 64.1
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.2e-176 624.0 749 49.7
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 2.7e-173 612.8 534 65.9
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 2.7e-173 612.8 534 65.9
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 2.7e-173 612.8 534 65.9
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.5e-171 607.1 561 61.1
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.7e-167 593.6 572 58.7
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 7.8e-165 584.7 563 59.5
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 1.6e-162 577.0 491 62.3
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.6e-157 560.5 414 71.3
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 5.8e-152 542.0 574 55.9
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.3e-138 497.7 397 70.8
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 5.4e-134 482.3 582 52.1
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 9.0e-129 464.9 627 48.0
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.4e-121 441.0 500 53.8
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-105 386.7 261 80.8
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.7e-101 373.6 336 60.4
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 1.1e-99 368.2 267 71.9
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 3.0e-84 317.0 285 63.9
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 1.2e-75 288.5 340 51.8
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 3.4e-75 287.0 235 66.0
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 5.7e-75 286.2 336 53.0
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.0e-67 261.2 192 70.8
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 7.5e-67 259.2 165 79.4
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 3.1e-65 253.8 552 36.8
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.0e-63 248.8 148 83.1
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.6e-61 241.5 164 74.4
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.3e-54 216.9 438 37.7
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.4e-52 211.8 208 56.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 2.0e-51 208.0 129 80.6
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 2.2e-50 204.5 170 60.6
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.2e-45 188.7 136 71.3
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 7.5e-43 179.5 127 69.3
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 7.1e-41 172.9 610 29.8
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 4.6e-40 170.2 174 56.3
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.8e-36 158.3 150 59.3
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 2.6e-35 154.5 117 73.5
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 2.9e-34 151.0 110 71.8
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 7.1e-33 146.4 159 54.7
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-32 145.2 160 54.4
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 3.2e-25 120.9 114 58.8
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.6e-24 118.6 70 85.7
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 3.3e-22 110.9 77 75.3
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.3e-21 109.0 57 93.0
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 8.1e-21 106.3 78 69.2
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.9e-17 95.1 182 37.4
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.6e-16 90.5 66 71.2
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 4.6e-16 90.5 86 52.3
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 6.0e-16 90.1 69 68.1
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.6e-13 82.0 82 50.0
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 9.9e-11 72.8 68 47.1
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.9e-10 71.2 50 72.0
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 6.4e-10 70.1 47 80.9
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 4.6e-08 63.9 49 69.4
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 6.7e-07 60.1 53 49.1
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.1e-06 59.3 64 56.2
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 2.5e-06 58.2 53 47.2
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 3.3e-06 57.8 35 77.1


User provided reference genes

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