Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.0e-201 706.4 342 100.0
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.1e-195 686.4 343 97.7
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 6.7e-193 677.2 342 95.3
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.2e-191 672.2 341 94.7
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.4e-190 668.7 342 94.2
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.2e-189 666.4 342 93.6
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.5e-189 664.5 343 93.9
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.5e-189 664.5 343 93.9
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.0e-188 663.3 343 93.6
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 8.5e-188 660.2 343 93.3
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 8.5e-188 660.2 343 93.3
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 5.9e-181 637.5 353 87.3
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 9.1e-174 613.6 341 85.6
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.0e-156 554.7 340 77.1
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.1e-154 549.3 343 77.3
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.3e-153 545.8 342 76.9
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 6.8e-153 544.3 340 75.3
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 6.4e-151 537.7 309 80.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.1e-150 537.0 340 74.4
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.1e-150 537.0 340 75.0
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.4e-150 536.6 338 74.6
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 1.4e-150 536.6 338 74.9
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.4e-150 535.8 310 80.0
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.4e-150 535.8 342 74.9
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.4e-150 535.8 340 74.7
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.2e-150 533.9 335 75.2
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 9.2e-150 533.9 340 75.6
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.6e-149 533.1 345 75.4
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 1.6e-149 533.1 344 75.6
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.5e-149 531.9 322 76.7
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 4.6e-149 531.6 340 74.1
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.7e-148 529.6 338 74.9
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.7e-148 529.6 342 73.7
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 2.3e-148 529.3 337 73.0
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 5.0e-148 528.1 345 73.0
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 5.6e-147 524.6 309 79.3
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 3.6e-146 521.9 341 73.9
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 4.7e-146 521.5 340 73.5
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 6.2e-146 521.2 339 72.9
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.4e-145 520.0 339 72.3
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.8e-145 519.6 340 72.6
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.3e-145 519.2 347 72.0
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 3.1e-145 518.8 340 71.5
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 4.0e-145 518.5 340 73.5
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 4.0e-145 518.5 346 71.1
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 5.2e-145 518.1 340 72.6
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 5.2e-145 518.1 340 71.2
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 5.2e-145 518.1 344 72.7
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 8.9e-145 517.3 338 73.7
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.2e-144 516.9 338 72.5
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 2.6e-144 515.8 339 72.0
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.6e-144 515.8 343 72.0
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.8e-144 514.6 338 72.2
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 9.9e-144 513.8 333 72.1
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.3e-143 513.5 343 71.1
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.2e-143 512.7 330 73.0
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.9e-143 512.3 330 72.7
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.7e-143 511.9 330 71.8
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 4.9e-143 511.5 340 71.2
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 4.9e-143 511.5 330 71.5
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 8.3e-143 510.8 338 72.5
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.1e-142 510.4 340 71.8
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.4e-142 510.0 330 72.7
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.9e-142 509.6 339 71.1
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.9e-142 509.6 341 71.8
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.9e-142 509.6 338 71.9
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 5.4e-142 508.1 340 71.5
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 5.4e-142 508.1 345 71.3
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 7.1e-142 507.7 339 70.8
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.6e-141 506.5 325 75.1
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.6e-141 506.5 340 72.6
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.1e-141 506.1 308 75.6
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 2.1e-141 506.1 308 75.6
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.5e-141 505.4 330 72.7
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 3.5e-141 505.4 340 70.9
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 6.0e-141 504.6 338 71.6
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.8e-141 504.2 330 72.4
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 2.3e-140 502.7 340 72.9
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.0e-140 502.3 338 71.0
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.6e-138 496.5 309 74.4
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 2.8e-138 495.7 338 69.2
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 8.1e-138 494.2 337 69.4
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.4e-137 492.7 338 69.8
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 4.0e-137 491.9 337 69.4
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.8e-137 491.1 338 69.8
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 3.4e-136 488.8 323 70.0
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 7.6e-136 487.6 338 69.2
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 7.6e-136 487.6 323 69.7
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 9.9e-136 487.3 325 71.1
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.4e-134 482.6 387 62.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 4.1e-134 481.9 318 71.1
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 3.5e-133 478.8 340 68.5
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 7.8e-133 477.6 323 71.5
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.3e-132 476.1 340 65.9
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 5.1e-132 474.9 304 75.3
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.5e-131 473.4 340 65.6
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 6.2e-130 468.0 300 72.0
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.2e-130 468.0 340 66.5
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 9.0e-129 464.2 340 66.2
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.5e-128 463.4 344 64.8
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.6e-128 461.1 320 70.3
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.3e-127 460.3 351 64.7
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.2e-127 459.5 362 62.4
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 2.2e-127 459.5 339 66.4
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.9e-126 456.4 340 63.8
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 7.1e-126 454.5 334 67.7
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.1e-125 453.0 307 67.8
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 2.1e-125 453.0 319 70.5
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 7.8e-125 451.1 224 96.4
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 6.6e-124 448.0 354 63.6
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.4e-121 439.5 319 66.5
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 5.3e-121 438.3 266 77.4
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 3.4e-120 435.6 338 62.1
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 5.8e-120 434.9 341 61.3
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 9.9e-120 434.1 323 64.1
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 2.9e-119 432.6 340 63.5
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.4e-119 431.4 305 65.2
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 8.4e-119 431.0 264 76.9
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.5e-117 425.6 290 69.7
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.0e-117 424.9 284 68.7
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.4e-113 412.9 246 80.1
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 8.4e-111 404.4 316 60.4
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.6e-109 400.2 309 61.8
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 8.7e-108 394.4 314 61.1
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 3.3e-107 392.5 288 64.9
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.1e-97 359.4 404 48.8
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 4.6e-93 345.5 306 58.5
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.7e-90 337.0 228 67.1
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.4e-88 329.3 260 62.7
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.8e-84 317.0 243 62.1
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 8.2e-82 308.1 305 51.5
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.6e-80 303.1 247 59.1
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.8e-74 283.1 269 54.6
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.5e-70 270.8 305 47.2
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.5e-70 270.0 169 74.6
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 8.0e-69 265.0 174 73.0
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.9e-54 217.2 176 61.4
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 5.5e-54 215.7 131 76.3
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 7.2e-54 215.3 140 68.6
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.2e-45 188.0 113 77.9
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 4.9e-34 149.4 96 74.0
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 8.1e-29 132.1 169 47.3
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.7e-23 114.4 98 56.1
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 5.1e-23 112.8 64 78.1
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 5.1e-23 112.8 66 75.8
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 6.2e-21 105.9 69 73.9
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.7e-16 90.5 55 72.7
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 1.7e-15 87.8 158 34.8
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.1e-12 78.6 80 51.2
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 1.8e-12 77.8 198 29.8
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 6.9e-12 75.9 67 52.2
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 2.6e-11 73.9 196 29.6
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 4.9e-10 69.7 222 25.2
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 9.3e-09 65.5 213 26.8
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 9.3e-09 65.5 95 36.8
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.1e-08 64.3 58 62.1
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.0e-07 62.0 203 26.6
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.7e-07 61.2 48 60.4
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 2.3e-07 60.8 40 70.0
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 6.6e-07 59.3 36 80.6
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.9e-06 57.8 36 77.8
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 1.9e-06 57.8 180 28.9
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 1.9e-06 57.8 208 26.0
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 2.5e-06 57.4 156 26.3
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 3.3e-06 57.0 78 43.6
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.3e-06 57.0 153 26.8
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 4.3e-06 56.6 153 26.8
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.3e-06 56.6 153 26.8
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 5.6e-06 56.2 200 26.0
Glyma.19G115100 Glycine max HOM05D002024 ORTHO05D004352 5.6e-06 56.2 199 25.6
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 5.6e-06 56.2 152 26.3
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 7.3e-06 55.8 152 27.6
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 7.3e-06 55.8 153 27.5
Eucgr.A02131 Eucalyptus grandis HOM05D002024 ORTHO05D004352 9.6e-06 55.5 202 26.2


User provided reference genes

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