Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 0.0e+00 1151.7 585 100.0
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 0.0e+00 1085.9 585 94.4
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 3.1e-307 1057.7 586 92.3
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.5e-296 1021.5 588 88.8
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 2.2e-292 1008.4 598 87.1
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.8e-291 1005.4 599 88.0
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.1e-288 996.1 594 86.4
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.1e-288 996.1 594 86.4
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.5e-288 995.7 595 86.4
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.5e-288 995.7 595 86.4
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 9.5e-288 993.0 602 85.2
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.6e-287 992.3 594 86.0
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 7.8e-266 920.2 564 84.8
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 5.4e-243 844.3 597 74.0
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 5.1e-225 784.6 592 68.2
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 9.7e-224 780.4 507 76.3
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.2e-223 779.2 578 69.6
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 2.2e-223 779.2 577 70.7
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.4e-222 775.8 573 68.9
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 6.9e-222 774.2 547 71.5
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 6.9e-222 774.2 542 72.3
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.3e-220 770.0 595 66.2
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.7e-220 769.6 560 70.4
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.7e-220 769.6 591 67.0
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 5.0e-220 768.1 596 66.8
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 5.0e-220 768.1 534 72.5
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.5e-219 765.8 595 66.4
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 7.2e-219 764.2 587 67.1
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 9.3e-219 763.8 544 71.0
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.7e-218 762.3 507 75.3
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.7e-218 762.3 507 75.3
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 3.6e-218 761.9 560 69.1
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 4.6e-218 761.5 538 72.1
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.8e-217 759.6 509 74.1
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.8e-217 759.6 527 71.7
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 8.8e-217 757.3 546 70.1
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.5e-216 756.5 580 67.9
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.5e-216 756.5 543 70.7
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.9e-216 756.1 604 65.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.5e-216 755.7 569 68.4
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.5e-216 755.7 591 67.0
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 7.4e-216 754.2 575 68.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.3e-215 753.4 546 70.3
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.1e-214 750.4 541 71.3
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.1e-214 750.4 595 66.1
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.8e-214 749.6 509 72.3
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.4e-214 749.2 507 75.3
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 2.4e-214 749.2 507 75.1
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.1e-214 748.8 507 73.2
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.5e-213 746.5 566 67.5
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 3.4e-213 745.3 579 66.1
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 4.5e-213 745.0 596 65.3
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 5.9e-213 744.6 595 66.1
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 2.9e-212 742.3 539 70.1
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.9e-212 742.3 572 67.1
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 3.8e-212 741.9 543 70.2
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 5.0e-212 741.5 599 64.9
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 8.5e-212 740.7 506 73.5
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.1e-211 740.3 580 65.3
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.9e-211 739.6 505 72.3
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.2e-211 738.8 595 66.7
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.2e-211 738.4 540 68.5
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 7.2e-211 737.6 584 65.2
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 7.2e-211 737.6 500 74.0
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 7.2e-211 737.6 531 69.3
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 9.4e-211 737.3 597 65.0
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.2e-210 736.9 499 74.1
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 3.6e-210 735.3 503 73.6
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 4.7e-210 734.9 521 71.8
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.8e-209 733.0 509 72.9
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.8e-209 733.0 510 71.4
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 3.9e-209 731.9 572 66.1
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.5e-208 729.9 581 65.7
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.7e-207 726.5 525 69.5
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 6.9e-206 721.1 515 70.1
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.4e-205 718.8 585 64.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 3.4e-205 718.8 595 64.7
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 5.9e-205 718.0 569 65.6
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.9e-203 713.0 611 62.0
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 5.5e-203 711.4 572 65.6
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 2.3e-201 706.1 602 63.3
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.1e-198 697.2 512 70.3
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 4.5e-197 691.8 664 58.1
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 7.7e-197 691.0 548 67.0
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 5.0e-196 688.3 532 64.8
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 4.2e-195 685.3 558 63.8
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 2.1e-194 682.9 537 65.5
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.0e-192 676.4 508 69.1
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 6.3e-191 671.4 460 73.7
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 8.2e-191 671.0 492 70.5
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.0e-188 664.1 579 63.0
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 8.5e-188 661.0 633 58.3
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 5.5e-187 658.3 570 60.2
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.4e-184 648.7 459 70.2
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 9.8e-184 647.5 502 66.7
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 7.0e-182 641.3 488 63.5
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-181 639.8 592 57.6
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 3.0e-177 625.9 569 57.8
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 3.4e-176 622.5 588 58.0
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 2.8e-175 619.4 641 54.3
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 5.0e-164 582.0 451 66.3
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.5e-163 580.5 439 66.3
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.7e-159 567.0 559 55.6
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.1e-158 564.3 390 72.3
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.2e-158 561.2 437 61.1
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.9e-155 553.5 603 51.9
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 4.6e-133 479.2 594 47.8
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.3e-131 471.9 443 53.0
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 6.2e-130 468.8 491 50.9
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 9.0e-129 464.9 543 46.4
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 2.6e-128 463.4 345 68.4
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.1e-126 458.0 488 50.0
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.4e-118 431.0 382 63.9
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 9.3e-118 428.3 315 69.5
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.6e-117 427.6 438 52.7
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 3.0e-116 423.3 509 49.3
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 5.3e-113 412.5 456 52.6
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 8.2e-106 388.7 487 44.8
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.1e-101 372.5 266 71.1
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.0e-95 352.8 283 61.5
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 5.5e-86 322.8 204 74.0
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 5.7e-75 286.2 173 78.6
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.8e-73 281.2 262 55.7
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.7e-71 274.6 262 51.5
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.6e-69 268.1 202 61.9
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.7e-66 256.9 392 38.3
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 4.8e-66 256.5 208 65.4
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 3.3e-62 243.8 276 48.9
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.3e-58 231.9 178 64.6
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.7e-58 231.5 291 44.0
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.2e-57 225.7 268 47.8
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-54 218.8 131 77.9
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.3e-46 189.5 126 73.0
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.0e-44 183.7 177 57.1
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 5.2e-44 183.3 113 77.0
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.9e-41 174.9 272 39.7
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.1e-33 147.1 122 61.5
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 3.0e-31 141.0 269 34.9
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.2e-29 135.6 122 56.6
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 2.8e-29 134.4 106 60.4
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 7.6e-27 126.3 95 69.5
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.4e-25 121.3 120 52.5
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.5e-22 111.3 267 31.1
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.6e-22 110.2 112 50.0
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.1e-20 105.9 96 55.2
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.0e-20 104.0 91 57.1
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 6.9e-20 103.2 83 56.6
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 5.8e-19 100.1 56 87.5
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 9.9e-19 99.4 88 55.7
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.4e-17 95.5 228 34.6
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 3.2e-17 94.4 57 80.7
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 3.9e-15 87.4 69 62.3
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.1e-14 85.9 59 72.9
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.5e-14 85.5 54 75.9
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 5.6e-14 83.6 69 59.4
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.2e-11 75.9 319 25.1
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.8e-11 73.6 242 28.1
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 2.4e-09 68.2 105 38.1
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.0e-07 62.8 40 77.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 2.5e-06 58.2 36 75.0


User provided reference genes

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