Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 5.4e-181 637.5 315 100.0
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 2.6e-159 565.5 311 90.4
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 8.2e-145 517.3 313 83.1
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 5.7e-122 441.4 325 71.7
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 5.7e-122 441.4 325 71.7
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 5.7e-122 441.4 325 71.7
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 7.5e-122 441.0 315 73.7
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 7.5e-122 441.0 315 74.0
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 7.2e-117 424.5 268 79.1
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 7.2e-117 424.5 312 74.0
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 1.1e-112 410.6 239 79.9
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.4e-112 410.2 287 75.3
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 1.6e-103 380.2 242 76.0
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 4.9e-97 358.6 239 69.9
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 8.3e-97 357.8 242 69.0
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 2.7e-95 352.8 239 68.2
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 3.5e-95 352.4 220 74.1
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 4.6e-95 352.1 240 69.2
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 6.0e-95 351.7 239 70.3
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.7e-94 350.1 239 67.8
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 2.3e-94 349.7 235 70.2
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 3.0e-94 349.4 257 65.0
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 5.0e-94 348.6 239 68.6
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 3.3e-93 345.9 240 67.1
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 3.3e-93 345.9 231 68.8
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 1.6e-92 343.6 231 68.8
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 2.1e-92 343.2 233 70.0
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 2.1e-92 343.2 229 69.4
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 4.7e-92 342.0 220 70.5
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 8.1e-92 341.3 219 72.6
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 1.1e-91 340.9 229 68.6
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.8e-91 340.1 227 68.7
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 1.8e-91 340.1 231 67.1
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 3.1e-91 339.3 234 68.8
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 4.0e-91 339.0 229 68.1
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 5.2e-91 338.6 241 66.0
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 2.0e-90 336.7 229 67.7
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 2.0e-90 336.7 240 65.4
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 2.6e-90 336.3 241 65.6
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 1.7e-89 333.6 248 63.3
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 1.7e-89 333.6 225 68.9
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 2.2e-89 333.2 219 68.9
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 1.4e-88 330.5 231 66.2
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 2.4e-88 329.7 246 63.8
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 4.1e-88 328.9 245 64.1
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 7.1e-88 328.2 223 68.2
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 7.1e-88 328.2 169 93.5
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 1.2e-87 327.4 237 65.0
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 7.8e-87 324.7 228 67.1
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 1.0e-86 324.3 221 67.4
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.3e-86 323.9 223 67.3
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 1.7e-86 323.6 223 67.7
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 2.5e-85 319.7 218 65.6
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 5.6e-85 318.5 225 67.1
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 7.3e-85 318.2 235 63.0
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 7.3e-85 318.2 248 61.3
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 9.5e-85 317.8 203 71.9
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 1.6e-84 317.0 215 67.9
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 6.2e-84 315.1 247 61.1
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 6.2e-84 315.1 247 61.1
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.1e-83 314.3 233 62.7
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.1e-83 314.3 230 66.1
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.4e-83 313.9 220 65.9
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 1.8e-83 313.5 222 64.4
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 1.8e-83 313.5 230 66.1
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 4.0e-83 312.4 223 65.9
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 5.2e-83 312.0 255 59.2
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 1.2e-82 310.8 206 68.9
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 1.2e-82 310.8 227 63.4
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 1.2e-82 310.8 219 64.8
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 2.9e-81 306.2 294 54.1
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 4.9e-81 305.4 244 60.2
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 1.1e-80 304.3 216 62.5
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 1.1e-80 304.3 207 66.7
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 1.9e-80 303.5 233 63.1
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 1.9e-80 303.5 219 63.9
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 2.4e-80 303.1 227 62.6
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 2.4e-80 303.1 218 62.8
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 7.1e-80 301.6 217 64.5
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 2.1e-79 300.1 243 60.5
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 4.6e-79 298.9 220 64.5
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 1.0e-78 297.7 215 62.3
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 1.5e-77 293.9 215 63.3
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 5.2e-75 285.4 221 61.1
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 6.9e-75 285.0 251 57.0
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 1.7e-70 270.4 171 74.3
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 3.0e-70 269.6 183 66.7
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.8e-67 260.4 163 69.3
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 5.8e-66 255.4 153 73.2
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 2.2e-65 253.4 161 68.3
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 2.9e-65 253.1 160 70.6
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 1.9e-64 250.4 216 56.5
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 7.1e-64 248.4 171 69.6
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.1e-62 242.3 151 65.6
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 2.4e-56 223.4 167 63.5
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 4.2e-56 222.6 171 62.0
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 7.1e-56 221.9 147 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.1e-51 208.0 290 39.0
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 4.0e-51 206.1 145 73.8
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 6.7e-46 188.7 249 39.0
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 4.3e-45 186.0 164 60.4
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 7.4e-45 185.3 225 43.6
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 2.3e-38 163.7 115 68.7
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 7.4e-37 158.7 110 63.6
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 3.4e-34 149.8 156 45.5
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 4.7e-31 139.4 116 53.4
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 6.1e-31 139.0 189 38.6
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 1.7e-28 131.0 114 61.4
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 3.2e-16 90.1 64 73.4
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.2e-15 88.2 68 67.6
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 2.7e-15 87.0 70 54.3
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 3.6e-15 86.7 119 39.5
AL4G11760 Arabidopsis lyrata HOM05D001923 ORTHO05D001903 6.1e-15 85.9 80 65.0
Carub.0004s0142 Capsella rubella HOM05D001923 ORTHO05D001903 1.8e-14 84.3 81 63.0
CARHR113500 Cardamine hirsuta HOM05D001923 ORTHO05D001903 4.0e-14 83.2 75 64.0
AT2G22270 Arabidopsis thaliana HOM05D001923 ORTHO05D001903 4.4e-13 79.7 80 61.2
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 1.7e-12 77.8 51 60.8
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 8.2e-12 75.5 120 35.8
Sp4g01320 Schrenkiella parvula HOM05D001923 ORTHO05D001903 3.1e-11 73.6 80 60.0
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.2e-10 71.6 174 31.0
Thhalv10000268m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 2.0e-10 70.9 78 57.7
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 2.0e-10 70.9 52 57.7
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.3e-09 68.2 38 73.7
BcaC02g08718 Brassica carinata HOM05D001923 ORTHO05D001903 5.0e-09 66.2 115 45.2
C04p51370 Brassica napus HOM05D001923 ORTHO05D001903 5.0e-09 66.2 115 45.2
BolC4t26728H Brassica oleracea HOM05D001923 ORTHO05D001903 5.0e-09 66.2 115 45.2
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 3.2e-08 63.5 190 26.3
BcaC02g08675 Brassica carinata HOM05D001923 ORTHO05D001903 4.2e-08 63.2 114 44.7
BraA04t17312Z Brassica rapa HOM05D001923 ORTHO05D001903 7.2e-08 62.4 82 52.4
A04p16790 Brassica napus HOM05D001923 ORTHO05D001903 1.2e-07 61.6 81 53.1
Aa31LG6G15390 Aethionema arabicum HOM05D001923 ORTHO05D001903 8.0e-07 58.9 91 49.5
AL7G12094 Arabidopsis lyrata HOM05D001923 ORTHO05D001903 3.0e-06 57.0 105 41.0
Thhalv10024527m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 4.0e-06 56.6 108 42.6
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 5.2e-06 56.2 126 31.0
MELO3C007758.2 Cucumis melo HOM05D001923 ORTHO05D001903 5.2e-06 56.2 63 50.8
Psat1g141560 Pisum sativum HOM05D006551 ORTHO05D008546 8.8e-06 55.5 48 54.2


User provided reference genes

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