Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 4.7e-289 997.3 552 100.0
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.4e-261 906.0 552 90.6
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 7.2e-245 850.5 554 84.8
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.2e-244 849.7 553 85.2
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 3.8e-238 828.2 568 81.0
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 3.8e-230 801.6 613 75.2
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.0e-222 776.9 548 79.2
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.0e-222 776.9 548 79.2
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 1.9e-221 772.7 548 78.6
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 3.2e-213 745.3 550 78.5
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 2.6e-210 735.7 546 78.4
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 5.7e-210 734.6 545 78.2
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 1.1e-205 720.3 578 72.7
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 1.9e-205 719.5 550 71.6
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 6.6e-174 614.8 542 67.3
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 6.6e-174 614.8 558 68.6
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 5.8e-162 575.1 554 65.9
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 3.4e-154 549.3 545 62.6
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 6.7e-150 535.0 548 61.3
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 3.3e-141 506.1 570 51.9
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 2.2e-137 493.4 581 53.9
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 2.3e-134 483.4 555 53.9
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 4.3e-133 479.2 569 52.2
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 6.9e-131 471.9 568 48.8
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 1.0e-129 468.0 574 49.1
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 5.0e-129 465.7 575 52.2
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 8.5e-129 464.9 576 49.7
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.9e-128 463.8 565 54.2
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.5e-128 463.4 576 51.0
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.2e-127 461.1 480 57.7
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 7.9e-127 458.4 511 51.5
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 3.9e-126 456.1 573 49.7
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 3.9e-126 456.1 609 46.1
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 8.8e-126 454.9 391 70.1
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 2.6e-125 453.4 597 50.1
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 1.7e-124 450.7 463 54.9
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.7e-124 450.7 636 49.1
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 3.7e-124 449.5 573 51.3
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 8.2e-124 448.4 561 53.5
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.1e-123 448.0 565 51.0
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 6.9e-123 445.3 561 53.3
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 6.9e-123 445.3 557 51.7
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 9.1e-123 444.9 559 51.7
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 2.6e-122 443.4 570 52.6
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 7.7e-122 441.8 465 54.8
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 7.7e-122 441.8 465 54.8
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 1.7e-121 440.7 419 58.9
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 6.5e-121 438.7 606 50.2
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 1.1e-120 438.0 567 50.4
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 1.4e-120 437.6 576 50.5
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 3.2e-120 436.4 571 51.1
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.2e-119 434.5 464 57.3
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 3.6e-119 433.0 676 46.2
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 2.3e-118 430.3 534 53.2
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 3.9e-118 429.5 464 57.3
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 8.8e-118 428.3 602 44.2
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.1e-117 427.9 301 70.4
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 1.5e-117 427.6 301 69.4
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.5e-117 427.6 577 45.9
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 2.0e-117 427.2 302 68.5
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 3.3e-117 426.4 568 46.0
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 4.4e-117 426.0 566 50.9
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 4.4e-117 426.0 302 68.5
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 5.7e-117 425.6 302 67.2
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 2.8e-116 423.3 306 67.0
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 1.1e-115 421.4 548 46.4
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 1.4e-115 421.0 302 67.5
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 4.1e-115 419.5 639 45.7
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 9.1e-115 418.3 609 47.3
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 1.6e-114 417.5 539 50.3
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 2.0e-114 417.2 547 52.8
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 3.5e-114 416.4 505 50.5
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 7.7e-114 415.2 624 46.8
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.0e-113 414.8 609 47.1
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.3e-113 414.5 302 65.9
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 8.5e-113 411.8 301 64.5
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 8.5e-113 411.8 303 65.0
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.9e-112 410.6 627 45.6
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 5.5e-112 409.1 303 65.0
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 3.6e-111 406.4 597 46.9
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 3.3e-109 399.8 577 49.9
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 3.3e-109 399.8 304 63.2
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 7.5e-109 398.7 302 64.9
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 9.7e-109 398.3 305 63.6
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 9.7e-109 398.3 625 45.6
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 2.8e-108 396.7 307 63.5
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.4e-107 394.4 580 49.0
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.1e-107 392.9 303 63.0
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 9.1e-107 391.7 549 47.5
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 7.7e-106 388.7 302 61.3
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 2.9e-105 386.7 364 54.7
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 7.2e-104 382.1 305 63.0
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.2e-103 381.3 555 44.5
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 3.0e-102 376.7 646 43.0
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.2e-100 370.5 299 59.2
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.8e-99 367.5 272 64.3
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 5.9e-98 362.5 302 61.3
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 5.0e-97 359.4 302 60.3
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 2.3e-94 350.5 434 56.0
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 5.2e-94 349.4 525 42.9
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 2.8e-92 343.6 302 56.6
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 2.8e-92 343.6 617 40.5
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 3.8e-89 333.2 308 54.2
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 6.1e-87 325.9 301 54.5
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 7.8e-82 308.9 657 37.0
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 3.9e-81 306.6 298 54.4
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 9.2e-75 285.4 624 35.4
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.6e-74 283.1 478 40.2
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 1.3e-73 281.6 327 45.6
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 3.9e-73 280.0 252 59.5
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.4e-70 271.6 328 45.7
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 8.1e-63 245.7 540 36.3
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 6.4e-60 236.1 322 38.8
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 3.9e-57 226.9 180 59.4
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.1e-56 225.3 571 33.3
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.1e-55 221.1 186 59.1
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.7e-55 219.9 195 56.9
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.9e-48 198.0 261 43.3
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 4.0e-46 190.3 123 77.2
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 3.4e-37 160.6 379 30.1
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 4.3e-32 143.7 279 34.4
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.3e-25 121.3 64 87.5
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.5e-24 118.6 93 63.4
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 1.5e-21 108.6 69 73.9
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 2.0e-21 108.2 184 36.4
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 4.3e-16 90.5 62 64.5
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 6.3e-15 86.7 44 90.9
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.5e-13 82.0 320 29.7
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 5.9e-13 80.1 59 66.1
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 8.8e-09 66.2 45 73.3
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 6.3e-07 60.1 52 42.3
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.8e-06 58.5 53 52.8


User provided reference genes

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