Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 4.7e-158 561.2 299 100.0
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.6e-153 546.2 309 95.1
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 3.2e-146 521.9 306 91.8
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 4.1e-146 521.5 308 90.6
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.4e-141 506.5 312 88.5
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 3.5e-137 491.9 300 88.0
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 3.5e-137 491.9 300 88.0
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 8.6e-136 487.3 301 88.4
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 8.6e-136 487.3 301 88.4
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 8.6e-136 487.3 301 88.4
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 8.6e-136 487.3 308 87.0
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.9e-135 486.1 301 87.7
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.0e-120 437.2 309 73.5
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 2.3e-120 436.0 308 73.7
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 5.1e-120 434.9 314 71.7
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 1.1e-119 433.7 307 75.2
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.3e-118 430.3 310 74.2
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.3e-118 430.3 310 74.2
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.8e-118 428.3 310 73.9
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 5.3e-117 424.9 309 71.5
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.5e-116 423.3 310 71.0
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.5e-116 423.3 309 71.2
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 2.6e-116 422.5 306 71.2
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.4e-116 422.2 310 71.6
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.4e-116 422.2 309 70.6
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 3.4e-116 422.2 309 70.6
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.5e-116 421.8 313 68.7
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 5.8e-116 421.4 316 70.6
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 5.8e-116 421.4 307 75.2
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 9.9e-116 420.6 303 72.9
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 6.4e-115 417.9 311 69.5
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 6.4e-115 417.9 316 69.6
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 8.4e-115 417.5 311 69.5
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 8.4e-115 417.5 308 71.1
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.9e-114 416.4 309 70.6
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.9e-114 416.4 307 70.4
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.4e-114 416.0 311 71.7
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 5.4e-114 414.8 317 69.4
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 5.4e-114 414.8 317 68.8
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 5.4e-114 414.8 309 73.8
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 7.1e-114 414.5 303 72.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.1e-114 414.5 313 69.3
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 9.3e-114 414.1 311 68.2
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.2e-113 413.7 311 67.5
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 2.1e-113 412.9 316 68.7
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.7e-113 412.5 307 70.0
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 6.0e-113 411.4 309 69.3
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 6.0e-113 411.4 303 70.0
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 7.9e-113 411.0 307 70.0
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 7.9e-113 411.0 309 68.6
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 7.9e-113 411.0 309 68.6
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 7.9e-113 411.0 310 67.7
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.0e-112 410.6 311 68.5
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.8e-112 409.8 299 70.6
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.3e-112 409.5 311 68.8
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.9e-112 408.7 311 68.5
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 5.1e-112 408.3 310 70.0
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 5.1e-112 408.3 314 67.2
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 5.1e-112 408.3 303 72.9
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 6.7e-112 407.9 311 68.5
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 8.7e-112 407.5 313 68.7
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.5e-111 406.8 311 68.5
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.5e-111 406.8 311 68.5
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 3.3e-111 405.6 320 66.6
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 3.3e-111 405.6 312 67.3
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 3.3e-111 405.6 312 67.3
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 4.3e-111 405.2 315 66.7
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 4.3e-111 405.2 313 67.4
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 4.3e-111 405.2 304 70.4
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.4e-111 404.4 311 67.8
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.7e-110 402.1 311 67.2
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 3.7e-110 402.1 309 68.3
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 3.7e-110 402.1 315 66.7
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 3.7e-110 402.1 315 66.0
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 6.2e-110 401.4 311 67.5
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 8.1e-110 401.0 307 69.1
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 8.1e-110 401.0 309 67.6
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 8.1e-110 401.0 308 66.2
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 2.4e-109 399.4 309 67.3
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.2e-108 397.1 345 62.0
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.5e-108 396.7 317 66.2
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 2.6e-108 396.0 309 68.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.6e-108 396.0 316 66.8
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 4.5e-108 395.2 300 72.3
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 9.9e-108 394.0 309 65.4
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.3e-107 393.7 349 61.3
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.7e-107 393.3 311 68.2
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 8.4e-107 391.0 311 65.9
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 8.4e-107 391.0 312 65.7
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.1e-106 390.6 312 65.1
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.4e-106 390.2 307 68.1
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 5.1e-104 381.7 301 66.8
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 8.7e-104 380.9 314 67.8
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.5e-103 379.4 302 67.2
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.1e-101 374.0 221 85.1
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.3e-99 367.1 221 83.3
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 2.5e-98 362.8 289 65.7
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 7.1e-98 361.3 221 80.5
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.0e-96 355.9 275 66.5
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 6.7e-96 354.8 328 61.6
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 6.7e-96 354.8 339 55.8
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.1e-95 354.0 334 59.3
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 4.3e-95 352.1 340 56.8
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.4e-92 342.4 227 75.8
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 4.5e-92 342.0 202 84.7
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 2.5e-90 336.3 301 57.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 3.6e-89 332.4 294 67.3
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 3.0e-88 329.3 317 55.2
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.9e-87 326.6 211 77.7
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 2.5e-87 326.2 203 79.8
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 9.7e-87 324.3 220 75.0
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.7e-86 323.6 309 59.9
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.5e-84 317.0 266 63.5
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 1.3e-83 313.9 302 57.0
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 3.8e-83 312.4 299 60.2
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 3.0e-80 302.8 298 55.7
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.5e-79 300.4 292 57.2
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 4.2e-74 282.3 183 77.0
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 8.0e-65 251.5 204 66.7
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 6.5e-59 231.9 232 56.0
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.2e-57 227.6 219 60.3
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 3.0e-56 223.0 384 39.8
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.2e-56 222.2 189 67.7
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.2e-46 190.3 189 54.5
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 6.3e-46 188.7 224 47.3
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 1.8e-45 187.2 117 82.9
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 3.1e-45 186.4 220 48.2
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.3e-43 180.3 300 41.7
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.6e-41 174.1 192 51.0
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 4.4e-39 166.0 96 92.7
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.6e-36 156.0 95 84.2
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.9e-35 152.9 101 72.3
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 3.3e-34 149.8 200 49.0
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.1e-32 144.8 122 64.8
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.5e-31 141.0 126 58.7
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.5e-31 141.0 126 58.7
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 9.8e-31 138.3 220 43.6
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.4e-29 134.4 93 76.3
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.0e-27 128.3 189 41.8
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.9e-27 126.3 80 80.0
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 2.3e-24 117.1 231 39.8
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 4.9e-22 109.4 138 45.7
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 9.2e-21 105.1 99 59.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.7e-14 84.3 58 72.4
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.4e-13 80.5 63 63.5
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.1e-11 72.8 41 75.6
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.6e-09 67.8 39 69.2
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.5e-07 61.2 61 52.5
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 2.6e-07 60.5 42 59.5
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 3.4e-07 60.1 42 59.5
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.4e-07 60.1 43 65.1
CsaV3_7G001090 Cucumis sativus L. HOM05D002972 ORTHO05D002272 5.8e-07 59.3 42 57.1
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 5.8e-07 59.3 42 57.1
RcHm_v2.0_Chr6g0278431 Rosa chinensis HOM05D002972 ORTHO05D002272 5.8e-07 59.3 58 48.3
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 7.6e-07 58.9 46 65.2
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 9.9e-07 58.5 37 62.2
Sed0027632 Sechium edule HOM05D002972 ORTHO05D002272 9.9e-07 58.5 42 54.8
ClCG02G004020 Citrullus lanatus HOM05D002972 ORTHO05D002272 1.7e-06 57.8 42 54.8
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.7e-06 57.8 56 50.0
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 2.2e-06 57.4 56 48.2
FAN27G2301 Fragaria x ananassa HOM05D002972 ORTHO05D002272 2.9e-06 57.0 58 44.8
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 2.9e-06 57.0 42 54.8
Potri.009G136400 Populus trichocarpa HOM05D002972 ORTHO05D002272 3.8e-06 56.6 42 52.4
Eucgr.I01432 Eucalyptus grandis HOM05D002972 ORTHO05D002272 8.4e-06 55.5 67 40.3
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 8.4e-06 55.5 47 55.3


User provided reference genes

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