Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1949.5 976 100.0
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1882.5 976 96.4
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1829.3 975 93.3
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1792.7 979 92.2
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1765.4 976 90.4
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1710.7 975 88.2
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1707.6 975 88.0
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1700.6 975 87.3
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1699.9 975 87.1
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1699.9 975 87.1
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1691.0 976 86.7
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1686.8 977 86.5
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1670.2 977 86.1
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1531.5 983 78.8
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1276.5 984 66.3
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1270.4 984 66.0
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1269.2 984 66.1
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1266.9 944 71.9
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1258.0 986 65.6
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1247.6 987 65.7
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1246.9 986 65.3
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1243.0 987 65.3
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1235.7 982 64.9
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1233.0 985 64.1
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1231.5 988 64.4
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1226.8 985 64.4
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1220.3 987 63.5
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1219.9 992 65.2
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1219.9 985 63.8
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1219.1 985 62.9
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1218.0 987 64.1
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1214.9 988 63.5
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1214.9 985 62.8
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1212.2 988 63.3
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1211.4 990 63.6
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1211.1 985 62.6
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1206.0 987 63.4
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1204.9 985 62.4
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1202.6 1000 61.7
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1197.6 989 63.2
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1196.8 1025 61.9
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1183.7 971 63.1
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1181.8 1054 59.7
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1177.5 987 61.2
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1177.5 982 61.8
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1174.8 990 60.8
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1174.1 985 61.8
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1173.7 990 60.5
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1173.7 987 61.5
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1172.1 985 61.8
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1171.8 987 61.7
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1171.0 987 61.0
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1170.2 987 61.1
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1167.5 983 60.9
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1163.3 990 60.6
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1162.1 987 60.6
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1161.4 987 60.4
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1158.7 985 61.6
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1158.7 972 62.4
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1158.3 989 61.2
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1156.0 990 60.1
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1155.6 990 59.9
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1153.7 972 61.5
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1151.7 990 59.9
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1150.6 977 62.2
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1144.8 972 62.0
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1142.9 986 60.5
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1142.9 999 59.3
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1138.3 975 59.7
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1137.5 970 59.5
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1135.2 1134 55.2
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1134.0 988 60.3
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1131.7 986 59.9
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1131.3 975 59.3
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1130.9 990 59.3
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1129.8 988 60.0
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1129.8 989 60.2
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1118.6 989 58.6
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1118.2 990 59.4
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1115.5 970 59.2
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1115.1 975 59.2
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1111.7 987 59.7
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1110.5 964 59.5
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1108.2 990 58.4
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1101.7 984 58.7
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 1.9e-309 1065.8 967 57.4
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 4.0e-307 1058.1 964 57.6
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 7.8e-303 1043.9 971 55.5
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.1e-291 1006.9 995 55.1
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 2.6e-290 1002.3 915 58.7
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 1.6e-284 983.0 861 59.2
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 1.1e-283 980.3 976 53.3
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 2.6e-282 975.7 973 53.3
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 4.6e-279 964.9 984 54.7
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 1.5e-277 959.9 971 53.6
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 1.8e-275 953.0 970 53.4
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 6.4e-273 944.5 994 50.6
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 2.9e-265 919.1 1008 51.3
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.6e-223 780.4 619 64.6
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 1.6e-218 763.8 1000 42.5
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.6e-205 719.9 987 42.4
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 4.4e-197 692.6 960 40.8
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 7.8e-194 681.8 900 43.0
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.3e-175 621.3 619 53.8
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 5.3e-158 562.8 484 60.3
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 5.5e-155 552.7 973 37.0
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 1.6e-114 418.3 277 81.6
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 6.1e-114 416.4 1067 30.0
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 3.1e-110 404.1 302 70.9
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 3.0e-105 387.5 291 63.9
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.8e-97 361.7 323 60.1
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.0e-96 358.2 318 58.8
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 2.6e-96 357.8 293 67.2
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 8.9e-89 332.8 234 72.6
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.3e-87 328.9 350 53.4
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 4.6e-85 320.5 301 54.8
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.6e-74 285.4 979 27.4
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 4.2e-54 217.6 119 87.4
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.6e-45 189.1 189 54.5
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.0e-44 186.4 180 53.3
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.9e-39 168.3 169 53.3
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 3.4e-32 144.8 128 60.2
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 7.6e-32 143.7 666 25.1
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 3.0e-20 105.1 122 43.4
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.0e-08 65.9 73 53.4


User provided reference genes

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