Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G79280 Arabidopsis thaliana HOM05D003499 ORTHO05D004754 0.0e+00 3176.7 2094 100.0
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 0.0e+00 2889.0 2094 88.0
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 0.0e+00 2671.7 2132 77.1
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 0.0e+00 2572.7 2105 78.8
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 0.0e+00 2378.6 2111 72.3
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 0.0e+00 2291.9 2160 67.7
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 2270.7 2161 69.9
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 0.0e+00 2267.7 2142 70.4
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 2249.9 2134 68.7
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 0.0e+00 2249.9 2176 69.5
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 2205.6 2142 69.1
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 0.0e+00 2179.4 2170 68.1
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 2149.0 2136 67.6
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 0.0e+00 2133.2 2160 66.8
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 0.0e+00 2104.7 2171 65.6
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 0.0e+00 2063.9 2132 65.9
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 0.0e+00 2045.8 2135 65.5
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 0.0e+00 1911.0 2122 61.5
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 0.0e+00 1579.7 1853 55.1
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 0.0e+00 1577.0 2114 49.6
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 0.0e+00 1571.6 2149 49.0
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 0.0e+00 1563.1 2134 48.6
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 0.0e+00 1563.1 2134 48.5
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 0.0e+00 1562.0 1857 53.3
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 0.0e+00 1543.1 2116 50.3
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 0.0e+00 1523.5 2129 49.0
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 0.0e+00 1522.3 2131 49.9
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 0.0e+00 1516.9 2127 49.9
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 0.0e+00 1510.4 1956 49.8
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 0.0e+00 1488.8 2158 48.0
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 0.0e+00 1479.5 2125 50.0
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1468.0 1889 51.1
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 0.0e+00 1449.9 1988 49.8
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1444.1 1882 49.8
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 0.0e+00 1442.2 2071 47.9
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1436.8 1922 49.2
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 0.0e+00 1431.8 2123 46.7
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 0.0e+00 1428.3 2136 45.5
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 0.0e+00 1426.4 2142 45.6
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1425.2 2120 46.1
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 0.0e+00 1414.8 2290 44.0
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 0.0e+00 1413.7 2127 46.6
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 0.0e+00 1407.5 1881 49.5
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 0.0e+00 1405.6 1877 49.7
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 0.0e+00 1397.9 1865 49.7
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 0.0e+00 1397.5 2129 46.1
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 0.0e+00 1395.2 2111 46.1
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1389.8 1883 48.9
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 0.0e+00 1383.2 1848 48.5
Cfa017771 Carpinus fangiana HOM05D003499 ORTHO05D004754 0.0e+00 1376.7 2130 46.8
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 0.0e+00 1372.8 1871 49.5
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 0.0e+00 1368.6 2107 47.9
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 0.0e+00 1367.8 1844 48.5
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 0.0e+00 1366.7 2120 47.1
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 0.0e+00 1360.9 2127 46.9
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 0.0e+00 1352.8 1828 49.8
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 0.0e+00 1333.2 1834 49.0
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 0.0e+00 1330.9 2097 44.2
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 0.0e+00 1297.7 2093 46.2
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 0.0e+00 1289.6 1400 56.2
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 0.0e+00 1287.3 2136 43.0
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 0.0e+00 1280.8 1847 49.3
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 0.0e+00 1277.7 1855 48.9
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 0.0e+00 1276.9 2120 45.0
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 0.0e+00 1246.5 1852 49.5
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 0.0e+00 1245.0 2113 42.6
AL2G39750 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 0.0e+00 1244.6 906 77.3
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 0.0e+00 1231.5 1401 52.0
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 0.0e+00 1230.7 2119 41.7
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 0.0e+00 1224.5 1436 52.2
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 0.0e+00 1218.8 2159 44.4
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1218.0 2441 40.4
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 0.0e+00 1208.7 1829 44.6
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 0.0e+00 1208.4 2135 42.4
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 0.0e+00 1206.4 1862 45.9
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 0.0e+00 1206.0 1400 51.0
TAR626G0290 Trochodendron aralioides HOM05D003499 ORTHO05D004754 0.0e+00 1201.0 1833 47.0
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 0.0e+00 1200.3 1856 47.8
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 0.0e+00 1197.6 1866 47.6
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 0.0e+00 1196.8 2109 42.3
PSO675G8338 Papaver somniferum HOM05D003499 ORTHO05D004754 0.0e+00 1196.0 1486 49.6
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 0.0e+00 1192.9 2116 41.8
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 0.0e+00 1187.6 2142 41.0
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1178.7 2150 42.5
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 0.0e+00 1176.4 1904 46.1
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 0.0e+00 1173.3 1399 52.4
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 0.0e+00 1170.6 1903 46.3
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 0.0e+00 1144.4 1868 43.8
Nitab4.5_0005627g0040 Nicotiana tabacum HOM05D003499 ORTHO05D004754 0.0e+00 1142.9 2124 39.9
Peaxi162Scf00579g00316 Petunia axillaris HOM05D003499 ORTHO05D004754 0.0e+00 1124.0 2127 41.6
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 0.0e+00 1106.7 2116 42.8
DCAR_013704 Daucus carota HOM05D003499 ORTHO05D004754 0.0e+00 1092.8 1862 43.4
PSO541G3284 Papaver somniferum HOM05D003499 ORTHO05D004754 0.0e+00 1080.1 1842 43.2
MELO3C012583.2 Cucumis melo HOM05D003499 ORTHO05D004754 1.7e-310 1070.5 1604 47.4
HanXRQChr08g0213121 Helianthus annuus HOM05D003499 ORTHO05D004754 2.0e-279 967.2 1394 44.9
Hma1.2p1_0151F.1_g066930 Hydrangea macrophylla HOM05D003499 ORTHO05D004754 7.1e-277 958.7 946 59.1
Zm00001eb194730 Zea mays HOM05D003499 ORTHO05D004754 1.1e-274 951.4 1384 43.9
unitig_578.g16338 Utricularia gibba HOM05D003499 ORTHO05D004754 5.4e-269 932.6 2122 37.7
Pp3c8_8020 Physcomitrium patens HOM05D003499 ORTHO05D004754 1.5e-263 914.4 1415 41.3
MBI02_g17882_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 4.2e-261 906.4 913 57.6
Os02g0741500 Oryza sativa ssp. japonica HOM05D003499 ORTHO05D004754 1.6e-257 894.4 1438 42.0
AagrBONN_evm.TU.Sc2ySwM_344.3653 Anthoceros agrestis HOM05D003499 ORTHO05D004754 4.0e-256 889.8 1405 41.1
Mapoly0042s0082 Marchantia polymorpha HOM05D003499 ORTHO05D004754 3.8e-254 883.2 1391 41.8
HPP92_017349 Vanilla planifolia HOM05D003499 ORTHO05D004754 2.7e-244 850.5 1224 45.8
SMO203G0250 Selaginella moellendorffii HOM05D003499 ORTHO05D004754 2.4e-224 784.3 1390 39.2
Haze_18466 Corylus avellana HOM05D003499 ORTHO05D004754 4.1e-224 783.5 2118 35.3
HPP92_017337 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.4e-195 688.7 1027 43.1
SEGI_36052 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 2.6e-194 684.5 831 49.1
Sabra16G0005400 Salix brachista HOM05D000228 ORTHO05D001122 1.4e-192 678.7 886 50.2
Solyc06g053570.2 Solanum lycopersicum HOM05D003499 ORTHO05D004754 1.4e-192 678.7 787 50.4
MD10G1218800 Malus domestica HOM05D003499 ORTHO05D004754 7.8e-191 672.9 766 56.5
SEGI_41216 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 3.5e-183 647.5 785 51.5
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 2.5e-181 641.3 2110 32.8
Oeu025989.1 Olea europaea HOM05D003499 ORTHO05D004754 2.2e-177 628.2 1441 38.1
vmacro21306 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 1.3e-169 602.4 790 50.1
Ca_03377_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 3.8e-169 600.9 712 51.3
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 3.5e-159 567.8 1413 38.0
MD10G1218600 Malus domestica HOM05D003499 ORTHO05D004754 7.1e-152 543.5 522 57.3
CBR_g33916 Chara braunii HOM05D003499 ORTHO05D004754 2.0e-138 498.8 904 38.6
Sabra11G0075400 Salix brachista HOM05D000228 ORTHO05D001122 1.1e-125 456.4 743 43.7
Sabra16G0132400 Salix brachista HOM05D000228 ORTHO05D001122 5.2e-102 377.9 745 38.9
Sabra19G0031300 Salix brachista HOM05D000228 ORTHO05D001122 6.3e-84 317.8 350 56.0
Lj2C7G1 Lonicera japonica HOM05D003499 ORTHO05D004754 8.6e-81 307.4 291 58.1
SEGI_27786 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 5.2e-78 298.1 513 44.1
vmacro21307 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 2.3e-73 282.7 465 41.3
Mapoly2166s0001 Marchantia polymorpha HOM05D003499 ORTHO05D004754 3.1e-70 272.3 516 35.7
AUR62044736 Chenopodium quinoa HOM05D003499 ORTHO05D004754 2.2e-68 266.2 401 47.6
HPP92_017338 Vanilla planifolia HOM05D003499 ORTHO05D004754 5.4e-67 261.5 329 49.5
PRCOL_00003349 Prasinoderma coloniale HOM05D003499 ORTHO05D004754 6.0e-66 258.1 1435 25.1
MBI02_g17883_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.8e-62 246.5 246 57.7
AL2G39760 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.3e-60 240.4 201 71.1
Sabra19G0031200 Salix brachista HOM05D000228 ORTHO05D001122 1.0e-57 230.7 492 37.0
Haze_18467 Corylus avellana HOM05D003499 ORTHO05D004754 1.2e-55 223.8 190 66.8
CBR_g33917 Chara braunii HOM05D003499 ORTHO05D004754 6.2e-55 221.5 405 36.8
MCO03G110 Micromonas commoda HOM05D003499 ORTHO05D004754 8.1e-55 221.1 1416 22.4
Haze_18469 Corylus avellana HOM05D003499 ORTHO05D004754 1.1e-54 220.7 281 48.4
SHI33381 Sapria himalayana HOM05D003499 ORTHO05D004754 1.1e-43 184.1 169 57.4
Cpa.g.sc569.2 Carica papaya HOM05D003499 ORTHO05D004754 3.0e-41 176.0 403 47.6
HanXRQChr11g0329221 Helianthus annuus HOM05D003499 ORTHO05D004754 1.5e-37 163.7 167 52.1
MELO3C000424.2 Cucumis melo HOM05D003499 ORTHO05D004754 3.7e-31 142.5 183 58.5
MBI12_g17629_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 5.3e-30 138.7 137 56.2
MBI07_g23017_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 9.9e-29 134.4 158 50.6
Cpa.g.sc31.23 Carica papaya HOM05D003499 ORTHO05D004754 2.2e-28 133.3 99 67.7
SalBow6G0003 Salvia bowleyana HOM05D003499 ORTHO05D004754 2.9e-28 132.9 186 44.1
SalBow6G2443 Salvia bowleyana HOM05D003499 ORTHO05D004754 3.8e-28 132.5 186 44.1
SalBow6G6137 Salvia bowleyana HOM05D003136 ORTHO05D003562 3.8e-28 132.5 186 44.1
MBI18_g33844_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.1e-26 126.7 152 47.4
MBI18_g27146_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 6.7e-25 121.7 237 38.0
SHI33383 Sapria himalayana HOM05D000105 ORTHO05D000023 9.6e-24 117.9 136 50.0
CDE05G0263 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 1.3e-20 107.5 112 48.2
MBI17_g19041_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 3.2e-19 102.8 95 57.9
MBI18_g13000_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 3.2e-19 102.8 177 41.8
MBI03_g24553_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 3.5e-18 99.4 95 56.8
MBI14_g41599_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 3.5e-18 99.4 95 54.7
MELO3C012602.2 Cucumis melo HOM05D003499 ORTHO05D004754 4.6e-18 99.0 101 52.5
AL8G20460 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.8e-17 97.1 192 43.8
MBI10_g08630_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.3e-17 96.7 133 47.4
Medtr2g450170 Medicago truncatula HOM05D003499 ORTHO05D004754 8.7e-17 94.7 144 45.8
Sabra16G0132500 Salix brachista HOM05D000228 ORTHO05D001122 3.3e-16 92.8 121 47.1
Sc21g0005210 Simmondsia chinensis HOM05D003499 ORTHO05D004754 6.3e-15 88.6 104 48.1
MBI16_g34347_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 3.1e-14 86.3 99 51.5
Cpa.g.c34987 Carica papaya HOM05D003499 ORTHO05D004754 1.3e-12 80.9 57 73.7
Sc15g0004610 Simmondsia chinensis HOM05D000219 ORTHO05D000226 5.0e-12 79.0 84 50.0
arahy.Tifrunner.gnm1.ann1.M9UA6E Arachis hypogaea HOM05D026678 ORTHO05D004754 6.5e-12 78.6 87 51.7
MBI10_g16742_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 8.5e-12 78.2 113 44.2
Cpa.g.sc2332.1 Carica papaya HOM05D003499 ORTHO05D004754 1.6e-10 73.9 262 31.3
COL.COLO4_35707 Corchorus olitorius HOM05D003499 ORTHO05D004754 6.1e-10 72.0 171 38.0
TPR.G30143 Trifolium pratense HOM05D000631 ORTHO05D011720 1.8e-09 70.5 275 28.7
Cpa.g.c39206 Carica papaya HOM05D003499 ORTHO05D004754 3.0e-09 69.7 82 48.8
Lj2A6T29 Lonicera japonica HOM05D003499 ORTHO05D004754 3.9e-09 69.3 709 23.7
MBI02_g18804_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 5.1e-09 68.9 100 46.0
Glyma.08G234500 Glycine max HOM05D003499 ORTHO05D011720 1.1e-08 67.8 227 30.0
Medtr8g447230 Medicago truncatula HOM05D000631 ORTHO05D011720 4.3e-08 65.9 244 28.3
Glyma.15G214700 Glycine max HOM05D014746 ORTHO05D011720 1.7e-07 63.9 227 29.1
Rhsim02G0129800 Rhododendron simsii HOM05D003499 ORTHO05D004754 3.7e-07 62.8 255 27.8
VMungo1127G1758 Vigna mungo HOM05D003499 ORTHO05D011720 3.7e-07 62.8 259 28.6
AL1G65480 Arabidopsis lyrata HOM05D054693 ORTHO05D080036 6.3e-07 62.0 70 58.6
AL1G65490 Arabidopsis lyrata HOM05D054693 ORTHO05D079273 2.4e-06 60.1 63 58.7
MBI02_g41948_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 3.1e-06 59.7 51 64.7
Glyma.15G219400 Glycine max HOM05D000631 ORTHO05D011720 5.3e-06 58.9 246 27.2
Rhsim03G0230300 Rhododendron simsii HOM05D000285 ORTHO05D004754 6.9e-06 58.5 248 29.8


User provided reference genes

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