Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.1e-116 423.3 210 100.0
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.7e-106 389.4 194 98.5
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 5.0e-106 387.9 194 97.9
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 8.5e-106 387.1 210 92.4
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.1e-105 386.7 194 97.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 2.5e-105 385.6 194 97.4
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 1.2e-104 383.3 194 96.9
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 2.7e-104 382.1 194 96.9
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 1.4e-103 379.8 194 96.4
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 1.4e-103 379.8 194 96.4
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 1.4e-103 379.8 194 96.4
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 1.4e-103 379.8 194 96.4
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 3.1e-100 368.6 194 91.2
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.6e-96 356.3 194 92.8
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 8.3e-93 344.0 194 84.0
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.6e-91 339.7 177 92.7
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.0e-91 339.3 194 82.5
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 2.7e-91 339.0 194 83.0
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 3.5e-91 338.6 194 83.5
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 5.9e-91 337.8 194 81.4
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.3e-90 336.7 194 82.0
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.7e-90 336.3 194 81.4
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 1.7e-90 336.3 194 81.4
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.3e-90 335.9 194 79.9
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 2.9e-90 335.5 194 83.0
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 3.9e-90 335.1 194 81.4
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 6.6e-90 334.3 194 82.5
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 8.6e-90 334.0 194 80.4
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 8.6e-90 334.0 194 80.4
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 8.6e-90 334.0 194 80.4
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.1e-89 333.6 194 82.5
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 1.5e-89 333.2 194 79.9
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 1.9e-89 332.8 194 80.4
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 1.9e-89 332.8 194 80.4
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 2.5e-89 332.4 194 82.0
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 3.3e-89 332.0 194 80.4
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 3.3e-89 332.0 194 79.9
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 3.3e-89 332.0 196 78.6
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 4.3e-89 331.6 194 80.9
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 7.3e-89 330.9 194 80.4
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 9.5e-89 330.5 194 80.9
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.2e-88 330.1 194 80.4
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.2e-88 330.1 194 80.4
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 1.2e-88 330.1 194 79.4
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 2.1e-88 329.3 193 80.3
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 2.8e-88 328.9 194 78.9
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 4.7e-88 328.2 194 80.4
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 4.7e-88 328.2 194 80.4
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 4.7e-88 328.2 194 79.4
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 6.1e-88 327.8 194 78.9
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 8.0e-88 327.4 194 78.4
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 1.0e-87 327.0 194 79.4
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.0e-87 327.0 195 80.0
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.0e-87 327.0 194 78.4
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.4e-87 326.6 194 79.9
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 1.4e-87 326.6 194 77.3
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 1.8e-87 326.2 198 79.8
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.8e-87 326.2 194 78.4
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 1.8e-87 326.2 194 79.4
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.3e-87 325.9 194 77.3
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 2.3e-87 325.9 194 77.3
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 5.2e-87 324.7 194 77.3
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 5.2e-87 324.7 194 78.9
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 6.8e-87 324.3 194 77.3
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 2.0e-86 322.8 194 78.4
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 2.0e-86 322.8 194 77.8
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.0e-86 322.8 214 73.4
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.6e-86 322.4 194 78.9
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 3.4e-86 322.0 194 76.3
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 4.4e-86 321.6 214 73.4
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 5.8e-86 321.2 194 78.4
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 7.5e-86 320.9 194 78.4
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.3e-85 320.1 194 77.8
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 8.3e-85 317.4 194 75.3
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 8.3e-85 317.4 200 74.5
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 2.4e-84 315.8 194 74.7
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 3.2e-84 315.5 187 78.1
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 3.2e-84 315.5 194 74.2
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 4.1e-84 315.1 194 76.8
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 9.2e-84 313.9 194 76.3
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.2e-83 313.5 194 76.3
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 2.7e-83 312.4 235 67.2
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 3.5e-83 312.0 214 71.0
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 2.3e-82 309.3 194 73.2
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 5.0e-82 308.1 191 76.4
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 1.5e-81 306.6 225 68.0
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.5e-81 306.6 194 72.7
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 4.3e-81 305.1 210 70.0
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 5.6e-81 304.7 194 72.2
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 2.8e-80 302.4 188 75.0
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 1.1e-79 300.4 178 77.5
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 1.4e-79 300.1 194 72.7
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 1.4e-79 300.1 194 69.1
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.8e-79 299.7 194 70.6
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 8.9e-79 297.4 195 70.3
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 1.5e-78 296.6 210 70.0
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 3.4e-78 295.4 194 73.7
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.4e-78 295.0 174 78.7
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 2.2e-77 292.7 194 71.1
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 7.1e-76 287.7 297 52.9
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 3.5e-75 285.4 161 83.9
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 2.1e-72 276.2 274 54.4
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 6.2e-72 274.6 162 80.9
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 8.9e-71 270.8 160 78.1
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 7.5e-70 267.7 172 71.5
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 1.7e-66 256.5 283 50.2
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.6e-56 223.4 114 96.5
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.2e-54 217.2 120 84.2
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 5.8e-54 214.9 120 82.5
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 7.6e-54 214.5 120 82.5
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 1.7e-53 213.4 178 55.6
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 5.4e-52 208.4 134 71.6
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 9.3e-52 207.6 129 76.0
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 7.3e-49 198.0 193 49.7
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 9.0e-47 191.0 123 73.2
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 3.4e-46 189.1 123 71.5
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 3.0e-42 176.0 173 50.3
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 1.1e-41 174.1 114 73.7
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 1.3e-40 170.6 122 65.6
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 8.1e-40 167.9 112 65.2
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.1e-39 167.5 99 80.8
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.0e-38 163.3 93 82.8
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 4.2e-36 155.6 209 38.8
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 1.5e-33 147.1 88 83.0
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 1.5e-33 147.1 88 83.0
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 4.3e-33 145.6 89 76.4
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 3.7e-32 142.5 73 91.8
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 3.7e-32 142.5 73 91.8
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 3.7e-32 142.5 73 91.8
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.2e-30 137.5 73 84.9
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 1.5e-30 137.1 76 80.3
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 2.0e-30 136.7 71 85.9
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 1.8e-26 123.6 64 85.9
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.1e-19 100.1 96 54.2
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 5.1e-18 95.5 59 76.3
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.5e-13 78.6 55 70.9
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 8.5e-13 78.2 83 50.6
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 8.5e-13 78.2 83 50.6
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.4e-12 77.4 60 65.0
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 5.1e-10 68.9 40 80.0
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 2.6e-09 66.6 56 57.1
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.4e-09 65.9 90 40.0


User provided reference genes

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