Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 9.7e-127 456.8 232 100.0
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 5.2e-120 434.5 232 96.1
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.4e-109 399.8 231 90.0
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 3.8e-107 391.7 233 88.0
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.5e-106 389.8 238 86.6
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 9.8e-103 377.1 238 84.5
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.7e-102 376.3 238 85.3
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 6.3e-102 374.4 238 85.7
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 8.3e-102 374.0 238 85.3
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.1e-101 373.6 236 83.5
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.1e-101 373.6 231 85.7
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 2.4e-101 372.5 238 83.6
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 5.4e-101 371.3 238 83.2
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-100 370.2 240 82.9
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.3e-99 366.7 240 81.7
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 2.3e-99 365.9 238 85.7
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 2.3e-99 365.9 238 85.7
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 3.8e-99 365.2 237 85.7
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 4.4e-95 351.7 235 77.4
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 4.9e-94 348.2 235 78.3
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 3.8e-91 338.6 197 83.2
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 9.5e-90 334.0 185 87.6
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 2.1e-89 332.8 238 72.7
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.6e-89 332.0 235 74.0
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 3.6e-89 332.0 237 73.4
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 8.0e-89 330.9 196 84.2
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.0e-88 330.5 196 83.2
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 2.3e-88 329.3 226 74.8
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.3e-88 329.3 180 87.2
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.3e-88 329.3 217 76.0
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 2.3e-88 329.3 210 79.0
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 3.0e-88 328.9 184 86.4
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 4.0e-88 328.6 227 74.9
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 4.0e-88 328.6 178 87.6
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 4.0e-88 328.6 178 87.6
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 5.2e-88 328.2 225 75.1
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 6.8e-88 327.8 225 73.8
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 8.9e-88 327.4 216 76.9
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 8.9e-88 327.4 236 72.9
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 8.9e-88 327.4 185 85.4
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 1.2e-87 327.0 196 81.6
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.5e-87 326.6 236 71.6
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 1.5e-87 326.6 222 75.7
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 1.5e-87 326.6 219 75.3
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.0e-87 326.2 198 81.8
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.0e-87 326.2 238 71.4
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.0e-87 326.2 238 71.4
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.0e-87 326.2 233 71.7
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 2.0e-87 326.2 196 83.7
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 2.6e-87 325.9 181 87.3
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 3.4e-87 325.5 245 69.8
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 3.4e-87 325.5 198 81.8
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 3.4e-87 325.5 192 83.9
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.4e-87 325.5 182 84.6
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 4.4e-87 325.1 233 75.5
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 7.5e-87 324.3 182 85.7
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 7.5e-87 324.3 228 72.8
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 7.5e-87 324.3 245 71.0
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 7.5e-87 324.3 188 84.0
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 9.8e-87 323.9 197 82.7
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.2e-86 322.8 177 87.6
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 2.9e-86 322.4 185 82.7
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 3.7e-86 322.0 243 70.8
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 4.9e-86 321.6 199 79.4
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 4.9e-86 321.6 195 81.0
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 6.4e-86 321.2 197 79.2
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 8.3e-86 320.9 197 82.7
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 8.3e-86 320.9 210 77.1
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 1.1e-85 320.5 213 75.6
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.1e-85 320.5 182 84.1
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 1.4e-85 320.1 242 70.2
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.4e-85 320.1 203 78.8
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 2.4e-85 319.3 197 79.7
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.2e-85 318.9 183 84.2
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.1e-85 318.5 232 70.7
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 7.0e-85 317.8 187 82.9
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 9.2e-85 317.4 238 71.0
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 9.2e-85 317.4 232 71.6
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 9.2e-85 317.4 197 80.2
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.7e-84 315.8 242 69.4
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.5e-84 315.5 182 83.5
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.5e-84 315.5 231 71.0
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 4.6e-84 315.1 235 72.3
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 4.6e-84 315.1 235 71.5
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.0e-83 313.9 230 72.6
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.3e-83 313.5 239 70.3
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.3e-83 313.5 210 76.2
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.3e-83 313.5 201 75.6
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 3.9e-83 312.0 178 83.7
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.9e-83 312.0 190 81.1
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 6.6e-83 311.2 190 80.5
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 1.9e-82 309.7 192 77.6
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 3.3e-82 308.9 234 68.4
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.2e-81 307.0 181 82.3
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 2.1e-81 306.2 173 83.8
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 2.8e-81 305.8 198 74.7
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.8e-81 305.8 165 87.3
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 4.7e-81 305.1 216 72.7
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 4.7e-81 305.1 237 67.9
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.1e-80 303.9 191 78.0
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 1.1e-80 303.9 222 69.4
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 6.8e-80 301.2 223 70.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 2.0e-79 299.7 175 81.1
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 2.6e-79 299.3 180 78.9
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 8.3e-78 294.3 180 76.7
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 1.1e-77 293.9 180 78.9
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.9e-77 293.1 181 78.5
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 5.0e-75 285.0 213 69.5
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.8e-73 279.3 175 78.9
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 3.6e-73 278.9 180 72.8
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.5e-71 273.5 232 63.8
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 8.3e-70 267.7 183 69.9
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.4e-69 266.9 152 82.2
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 7.1e-69 264.6 186 65.6
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 9.2e-69 264.2 186 73.1
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 8.6e-67 257.7 185 69.7
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 6.2e-65 251.5 180 70.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 4.0e-64 248.8 238 58.0
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 1.5e-63 246.9 190 64.2
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 6.0e-60 235.0 209 61.7
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 1.2e-55 220.7 122 87.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.3e-49 200.7 139 71.9
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.5e-47 193.7 118 77.1
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.8e-46 189.1 156 62.2
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 3.5e-44 182.6 104 88.5
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 4.6e-44 182.2 104 87.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.9e-42 176.8 158 60.1
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.9e-42 176.8 112 79.5
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 1.6e-41 173.7 116 74.1
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 1.2e-39 167.5 93 81.7
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.9e-34 150.2 108 70.4
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 9.0e-32 141.4 124 59.7
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.5e-31 139.0 82 82.9
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.0e-30 137.9 78 87.2
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 2.9e-30 136.3 147 42.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.9e-29 133.7 75 86.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 7.9e-28 128.3 87 75.9
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.0e-23 113.6 77 75.3
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.5e-18 97.4 92 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.9e-18 97.1 59 71.2
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.4e-15 86.3 49 83.7
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 5.7e-10 68.9 54 57.4
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.7e-10 68.9 47 68.1
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 3.4e-07 59.7 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 3.4e-07 59.7 28 89.3
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.4e-07 59.7 32 81.2


User provided reference genes

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