Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50300 Arabidopsis thaliana HOM05D005264 ORTHO05D005428 6.3e-112 407.9 283 100.0
Carub.0001s3940 Capsella rubella HOM05D005264 ORTHO05D005428 2.8e-104 382.5 285 93.3
AL1G57940 Arabidopsis lyrata HOM05D005264 ORTHO05D005428 2.4e-103 379.4 286 92.7
Sp1g37140 Schrenkiella parvula HOM05D005264 ORTHO05D005428 2.2e-101 372.9 227 82.8
Thhalv10011982m.g Eutrema salsugineum HOM05D005264 ORTHO05D005428 1.0e-98 364.0 217 86.2
C06p05380 Brassica napus HOM05D005264 ORTHO05D005428 6.8e-98 361.3 229 85.6
BolC6t35643H Brassica oleracea HOM05D005264 ORTHO05D005428 5.7e-97 358.2 229 85.6
Aa31LG10G3950 Aethionema arabicum HOM05D005264 ORTHO05D005428 9.8e-97 357.5 226 81.0
BcaB07g33480 Brassica carinata HOM05D005264 ORTHO05D005428 4.8e-96 355.1 227 84.6
BcaB04g17259 Brassica carinata HOM05D005264 ORTHO05D005428 2.4e-95 352.8 229 81.2
BraA08t32358Z Brassica rapa HOM05D005264 ORTHO05D005428 7.0e-95 351.3 230 85.2
A08p03250 Brassica napus HOM05D005264 ORTHO05D005428 1.2e-94 350.5 230 84.3
BcaC01g01222 Brassica carinata HOM05D005264 ORTHO05D005428 4.5e-94 348.6 230 80.9
C03p89560 Brassica napus HOM05D005264 ORTHO05D005428 4.5e-94 348.6 230 84.3
BolC3t21270H Brassica oleracea HOM05D005264 ORTHO05D005428 4.5e-94 348.6 230 80.9
BcaC08g43212 Brassica carinata HOM05D005264 ORTHO05D005428 1.9e-92 343.2 229 82.5
BraA06t23536Z Brassica rapa HOM05D005264 ORTHO05D005428 2.1e-91 339.7 231 82.7
A06p03250 Brassica napus HOM05D005264 ORTHO05D005428 2.8e-91 339.3 231 82.7
THA.LOC104826521 Tarenaya hassleriana HOM05D005264 ORTHO05D005428 5.6e-84 315.1 227 75.3
Potri.008G085400 Populus trichocarpa HOM05D005264 ORTHO05D005428 2.8e-75 286.2 233 67.8
MSTRG.26597 Avicennia marina HOM05D005264 ORTHO05D005428 3.6e-75 285.8 235 68.5
Ca_03040_v3 Cicer arietinum L. HOM05D005264 ORTHO05D005428 4.7e-75 285.4 236 64.8
Lj3g0025490 Lotus japonicus HOM05D005264 ORTHO05D005428 1.1e-74 284.3 239 66.9
Gorai.002G167100 Gossypium raimondii HOM05D005264 ORTHO05D005428 1.8e-74 283.5 234 69.2
Medtr4g074230 Medicago truncatula HOM05D005264 ORTHO05D005428 1.8e-74 283.5 232 64.2
Prupe.1G345000 Prunus persica HOM05D005264 ORTHO05D005428 1.8e-74 283.5 237 72.6
TPR.G21570 Trifolium pratense HOM05D005264 ORTHO05D005428 5.2e-74 282.0 239 61.9
MD16G1000100 Malus domestica HOM05D005264 ORTHO05D005428 1.2e-73 280.8 237 70.9
CiPaw.05G167900 Carya illinoinensis HOM05D005264 ORTHO05D005428 2.0e-73 280.0 237 68.4
Gohir.D01G138800 Gossypium hirsutum HOM05D005264 ORTHO05D005428 2.6e-73 279.6 234 68.4
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 2.6e-73 279.6 235 65.1
Psat7g174160 Pisum sativum HOM05D005264 ORTHO05D005428 4.4e-73 278.9 243 61.7
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 5.8e-73 278.5 236 64.0
Gohir.A01G146454 Gossypium hirsutum HOM05D005264 ORTHO05D005428 7.5e-73 278.1 234 67.1
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 2.2e-72 276.6 242 65.3
TWI77G0283 Tripterygium wilfordii HOM05D005264 ORTHO05D005428 3.7e-72 275.8 238 63.9
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 4.9e-72 275.4 242 65.3
Glyma.11G103900 Glycine max HOM05D005264 ORTHO05D005428 2.4e-71 273.1 235 64.3
FAN17G2909 Fragaria x ananassa HOM05D005264 ORTHO05D005428 3.2e-71 272.7 216 78.7
RcHm_v2.0_Chr4g0446411 Rosa chinensis HOM05D005264 ORTHO05D005428 3.2e-71 272.7 208 78.4
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 9.2e-71 271.2 236 61.9
HPP92_013043 Vanilla planifolia HOM05D005264 ORTHO05D005428 3.5e-70 269.2 239 65.7
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 4.6e-70 268.9 236 65.7
Glyma.12G028800 Glycine max HOM05D005264 ORTHO05D005428 6.0e-70 268.5 235 62.1
Gohir.A01G146300 Gossypium hirsutum HOM05D005264 ORTHO05D005428 7.8e-70 268.1 234 62.8
Gorai.002G167000 Gossypium raimondii HOM05D005264 ORTHO05D005428 1.0e-69 267.7 234 65.0
CANSAT54G0937 Cannabis sativa HOM05D005264 ORTHO05D005428 1.3e-69 267.3 212 70.3
Ah.01g001700 Amaranthus hybridus HOM05D005264 ORTHO05D005428 1.7e-69 266.9 230 65.7
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 3.0e-69 266.2 243 64.2
FvH4_4g36691 Fragaria vesca HOM05D005264 ORTHO05D005428 5.0e-69 265.4 208 77.4
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 6.6e-69 265.0 218 65.6
Cc11_g02330 Coffea canephora HOM05D005264 ORTHO05D005428 6.6e-69 265.0 229 60.7
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 8.6e-69 264.6 227 64.3
ECA246G0499 Erigeron canadensis HOM05D005264 ORTHO05D005428 1.1e-68 264.2 233 70.0
arahy.Tifrunner.gnm1.ann1.4UU5Y7 Arachis hypogaea HOM05D005264 ORTHO05D005428 1.5e-68 263.8 235 60.4
Eucgr.G02564 Eucalyptus grandis HOM05D005264 ORTHO05D005428 3.3e-68 262.7 224 65.6
Hund27680 Selenicereus undatus HOM05D005264 ORTHO05D005428 3.3e-68 262.7 229 65.1
Hund27681 Selenicereus undatus HOM05D005264 ORTHO05D005428 3.3e-68 262.7 229 65.1
Lj6C722G15 Lonicera japonica HOM05D005264 ORTHO05D005428 5.6e-68 261.9 231 67.1
PGR142G0147 Punica granatum HOM05D005264 ORTHO05D005428 5.6e-68 261.9 229 64.2
Atru.chr11.1210 Acer truncatum HOM05D005264 ORTHO05D005428 7.3e-68 261.5 236 64.0
Lalb_Chr10g0095091 Lupinus albus HOM05D005264 ORTHO05D005428 7.3e-68 261.5 235 62.1
Rhsim09G0072300 Rhododendron simsii HOM05D005264 ORTHO05D005428 7.3e-68 261.5 199 71.9
GSVIVG01010206001 Vitis vinifera HOM05D005264 ORTHO05D005428 7.3e-68 261.5 243 63.0
Oeu058145.2 Olea europaea HOM05D005264 ORTHO05D005428 9.5e-68 261.2 233 63.1
HanXRQChr17g0540751 Helianthus annuus HOM05D005264 ORTHO05D005428 1.6e-67 260.4 231 67.5
Thecc.02G294900 Theobroma cacao HOM05D005264 ORTHO05D005428 2.1e-67 260.0 234 63.2
MD13G1008100 Malus domestica HOM05D005264 ORTHO05D005428 4.7e-67 258.8 236 65.7
VMungo1127G0108 Vigna mungo HOM05D005264 ORTHO05D005428 6.2e-67 258.5 233 59.7
HanXRQChr06g0171921 Helianthus annuus HOM05D005264 ORTHO05D005428 8.1e-67 258.1 239 66.1
Hma1.2p1_0285F.1_g113900 Hydrangea macrophylla HOM05D005264 ORTHO05D005428 4.0e-66 255.8 234 65.0
Duzib248G0599 Durio zibethinus HOM05D005264 ORTHO05D005428 5.2e-66 255.4 234 63.7
Gohir.D01G138900 Gossypium hirsutum HOM05D005264 ORTHO05D005428 1.2e-65 254.2 228 62.7
SGA_v2.0_scaffold42G15896 Striga asiatica HOM05D005264 ORTHO05D005428 1.5e-65 253.8 238 68.5
Dinv03019 Davidia involucrata HOM05D005264 ORTHO05D005428 2.6e-65 253.1 241 66.0
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 3.4e-65 252.7 243 63.8
QL03p043270 Quercus lobata HOM05D005264 ORTHO05D005428 3.4e-65 252.7 237 59.1
Os07g0296200 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 1.7e-64 250.4 237 59.5
Aqoxy3G04289 Aquilegia oxysepala HOM05D005264 ORTHO05D005428 4.9e-64 248.8 235 62.1
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 8.3e-64 248.1 238 69.3
Actinidia04317 Actinidia chinensis HOM05D005264 ORTHO05D005428 3.2e-63 246.1 234 61.5
ATR0618G090 Amborella trichopoda HOM05D005264 ORTHO05D005428 5.4e-63 245.4 209 68.9
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 7.1e-63 245.0 273 52.0
FAN12G0559 Fragaria x ananassa HOM05D005906 ORTHO05D007359 7.1e-63 245.0 209 73.7
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 1.2e-62 244.2 233 61.8
FAN07G0309 Fragaria x ananassa HOM05D005906 ORTHO05D007359 2.7e-62 243.0 212 72.2
Manes.15G115200 Manihot esculenta HOM05D005264 ORTHO05D005428 4.6e-62 242.3 211 60.2
CARHR040350 Cardamine hirsuta HOM05D005264 ORTHO05D005428 7.8e-62 241.5 118 96.6
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 1.0e-61 241.1 242 57.0
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 1.3e-61 240.7 238 67.6
MELO3C009842.2 Cucumis melo HOM05D005264 ORTHO05D005428 3.0e-61 239.6 238 60.9
CsaV3_3G041120 Cucumis sativus L. HOM05D005264 ORTHO05D005428 5.1e-61 238.8 238 60.1
Migut.J00716 Erythranthe guttata HOM05D005264 ORTHO05D005428 5.1e-61 238.8 189 76.2
Solyc11g040050.3 Solanum lycopersicum HOM05D005264 ORTHO05D005428 8.6e-61 238.0 239 59.0
Sopen11g017230 Solanum pennellii HOM05D005264 ORTHO05D005428 8.6e-61 238.0 239 59.0
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 2.5e-60 236.5 203 70.0
Pp3c17_960 Physcomitrium patens HOM05D005264 ORTHO05D005428 2.5e-60 236.5 201 67.7
Sed0010268 Sechium edule HOM05D005264 ORTHO05D005428 5.6e-60 235.3 241 58.9
Peaxi162Scf00760g00024 Petunia axillaris HOM05D005264 ORTHO05D005428 7.3e-60 235.0 239 58.6
PGSC0003DMG400018999 Solanum tuberosum HOM05D005264 ORTHO05D005428 9.5e-60 234.6 239 58.6
CAN.G624.19 Capsicum annuum HOM05D005264 ORTHO05D005428 3.6e-59 232.6 204 64.7
Nitab4.5_0007261g0060 Nicotiana tabacum HOM05D005264 ORTHO05D005428 8.1e-59 231.5 237 58.6
DCAR_030406 Daucus carota HOM05D005264 ORTHO05D005428 2.4e-58 229.9 232 60.8
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 3.1e-58 229.6 241 58.9
Nitab4.5_0002113g0070 Nicotiana tabacum HOM05D005264 ORTHO05D005428 3.1e-58 229.6 237 58.2
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 1.5e-57 227.3 267 55.8
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 3.4e-57 226.1 233 58.4
CSS0010634 Camellia sinensis var. sinensis HOM05D005264 ORTHO05D005428 2.4e-55 219.9 239 58.2
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 5.4e-55 218.8 235 54.9
Ciclev10031922m.g Citrus clementina HOM05D005264 ORTHO05D005428 3.0e-53 213.0 240 59.2
AUR62015185 Chenopodium quinoa HOM05D005264 ORTHO05D005428 1.1e-50 204.5 215 54.0
AUR62044527 Chenopodium quinoa HOM05D005264 ORTHO05D005428 9.3e-47 191.4 211 52.6
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 7.8e-46 188.3 110 80.9
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 1.0e-45 188.0 232 49.1
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 1.1e-44 184.5 153 64.7
Actinidia04089 Actinidia chinensis HOM05D005264 ORTHO05D005428 4.2e-39 166.0 136 68.4
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 9.3e-39 164.9 231 47.2
Haze_11731 Corylus avellana HOM05D005264 ORTHO05D005428 1.8e-37 160.6 228 43.9
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 1.1e-36 157.9 206 44.2
Dinv24635 Davidia involucrata HOM05D005264 ORTHO05D005428 1.9e-36 157.1 168 59.5
SEGI_41358 Sequoiadendron giganteum HOM05D005264 ORTHO05D005428 1.6e-35 154.1 168 61.3
Gohir.D04G103133 Gossypium hirsutum HOM05D005264 ORTHO05D005428 9.6e-28 128.3 154 46.8
Gorai.009G406700 Gossypium raimondii HOM05D005264 ORTHO05D005428 1.3e-27 127.9 154 47.4
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 2.2e-24 117.1 132 50.8
HanXRQChr03g0087681 Helianthus annuus HOM05D005264 ORTHO05D005428 2.5e-23 113.6 100 63.0
C03p52890 Brassica napus HOM05D005264 ORTHO05D005428 7.1e-23 112.1 56 94.6
A09p24890 Brassica napus HOM05D000282 ORTHO05D005428 3.5e-22 109.8 56 94.6
A09p17330 Brassica napus HOM05D000282 ORTHO05D005428 4.6e-22 109.4 56 92.9
A09p31950 Brassica napus HOM05D000282 ORTHO05D005428 4.6e-22 109.4 56 92.9
C06p23970 Brassica napus HOM05D000282 ORTHO05D005428 4.6e-22 109.4 56 92.9
BraA09t37361Z Brassica rapa HOM05D000282 ORTHO05D005428 4.6e-22 109.4 56 92.9
BraA06t25936Z Brassica rapa HOM05D000282 ORTHO05D005428 1.0e-21 108.2 56 91.1
BraA10t43100Z Brassica rapa HOM05D000282 ORTHO05D005428 3.0e-21 106.7 56 89.3
A02p38960 Brassica napus HOM05D000282 ORTHO05D005428 3.9e-21 106.3 56 91.1
BraA03t13866Z Brassica rapa HOM05D000282 ORTHO05D005428 3.9e-21 106.3 56 91.1
C06p05330 Brassica napus HOM05D005264 ORTHO05D005428 5.7e-20 102.4 50 94.0
A10p10210 Brassica napus HOM05D000282 ORTHO05D005428 7.4e-20 102.1 53 88.7
A05p04440 Brassica napus HOM05D000282 ORTHO05D005428 1.6e-19 100.9 51 92.2
SEGI_00750 Sequoiadendron giganteum HOM05D005264 ORTHO05D005428 1.6e-19 100.9 79 67.1
A03p47520 Brassica napus HOM05D000282 ORTHO05D005428 1.8e-18 97.4 56 87.5
A03p65660 Brassica napus HOM05D005264 ORTHO05D005428 1.8e-18 97.4 56 87.5
A05p28360 Brassica napus HOM05D000282 ORTHO05D005428 1.8e-18 97.4 56 87.5
A10p17030 Brassica napus HOM05D005264 ORTHO05D005428 1.8e-18 97.4 56 87.5
A09p66890 Brassica napus HOM05D005264 ORTHO05D005428 5.3e-18 95.9 51 90.2
Lsat_1_v5_gn_9_89240 Lactuca sativa HOM05D005264 ORTHO05D005428 6.9e-18 95.5 55 81.8
A07p35900 Brassica napus HOM05D000282 ORTHO05D000272 5.9e-17 92.4 51 88.2
Gorai.001G120500 Gossypium raimondii HOM05D005264 ORTHO05D005428 5.9e-17 92.4 74 62.2
Gohir.D07G112100 Gossypium hirsutum HOM05D005264 ORTHO05D005428 1.3e-16 91.3 68 66.2
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 2.9e-16 90.1 149 37.6
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 7.4e-12 75.5 112 54.5
Glyma.01G117401 Glycine max HOM05D005264 ORTHO05D005428 1.0e-08 65.1 29 89.7
A03p37140 Brassica napus HOM05D000282 ORTHO05D005428 5.0e-08 62.8 28 89.3
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 2.5e-07 60.5 37 64.9
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 3.2e-07 60.1 37 67.6
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 5.5e-07 59.3 35 68.6
C01p30730 Brassica napus HOM05D000282 ORTHO05D000272 9.4e-07 58.5 24 91.7
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 9.4e-07 58.5 34 67.6
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.2e-06 58.2 34 70.6
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 1.2e-06 58.2 37 59.5
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.6e-06 57.8 36 63.9
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.6e-06 57.8 36 63.9
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.6e-06 57.8 36 63.9
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.6e-06 57.8 36 63.9
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.6e-06 57.8 36 63.9
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.6e-06 57.8 37 62.2
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.1e-06 57.4 35 65.7
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.7e-06 57.0 50 54.0
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 2.7e-06 57.0 35 65.7
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 2.7e-06 57.0 35 62.9
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 3.6e-06 56.6 36 61.1
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 3.6e-06 56.6 35 62.9
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 3.6e-06 56.6 36 61.1
BcaB03g11573 Brassica carinata HOM05D005264 ORTHO05D093400 4.7e-06 56.2 38 76.3
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 4.7e-06 56.2 35 65.7
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 4.7e-06 56.2 35 62.9
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 6.1e-06 55.8 36 63.9
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 6.1e-06 55.8 34 64.7
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 6.1e-06 55.8 36 63.9
CDE04G3789 Ceratophyllum demersum HOM05D005264 ORTHO05D005428 6.1e-06 55.8 42 61.9
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 6.1e-06 55.8 36 61.1
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 6.1e-06 55.8 35 62.9
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 6.1e-06 55.8 37 59.5
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 7.9e-06 55.5 41 61.0
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 7.9e-06 55.5 35 62.9
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 7.9e-06 55.5 34 64.7


User provided reference genes

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