Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 5.9e-106 387.5 190 100.0
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 1.2e-98 363.2 180 95.6
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 3.9e-89 331.6 180 87.2
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 6.6e-89 330.9 179 88.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 9.5e-88 327.0 180 85.6
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 8.0e-87 323.9 180 86.1
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 1.6e-82 309.7 181 84.5
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 5.2e-78 294.7 181 79.0
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 2.6e-77 292.4 181 79.6
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 2.6e-77 292.4 181 79.6
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 2.6e-77 292.4 181 79.6
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 9.2e-75 283.9 180 72.8
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 3.0e-73 278.9 181 75.7
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.9e-72 276.2 180 76.1
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 2.1e-71 272.7 186 73.7
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 2.0e-69 266.2 210 64.8
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 2.0e-69 266.2 179 67.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 9.9e-69 263.8 170 77.1
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.2e-66 256.9 188 62.2
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 3.5e-66 255.4 182 62.6
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.6e-66 255.0 179 62.0
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 1.0e-65 253.8 182 61.0
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-65 253.4 179 62.0
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 8.6e-65 250.8 188 60.6
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.9e-64 249.6 179 60.9
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 2.5e-64 249.2 182 62.1
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.5e-64 249.2 186 58.6
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.5e-64 249.2 179 63.7
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.5e-64 249.2 182 61.5
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 4.3e-64 248.4 182 62.6
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 7.3e-64 247.7 179 62.6
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 7.3e-64 247.7 182 61.0
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.2e-63 246.9 186 58.6
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.2e-63 246.9 179 60.3
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.6e-63 246.5 182 62.6
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 2.1e-63 246.1 186 58.1
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 6.2e-63 244.6 182 61.0
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 8.1e-63 244.2 167 64.7
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.4e-62 243.4 182 59.9
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 3.1e-62 242.3 182 58.8
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 3.1e-62 242.3 185 61.6
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 6.8e-62 241.1 196 57.7
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 4.4e-61 238.4 188 57.4
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 2.9e-60 235.7 194 57.2
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.8e-60 235.3 182 61.0
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 3.8e-60 235.3 189 60.8
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.1e-59 233.8 176 59.7
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 2.4e-59 232.6 182 57.1
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 2.4e-59 232.6 182 55.5
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 7.1e-59 231.1 187 56.7
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 3.5e-58 228.8 182 56.6
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 4.6e-58 228.4 182 58.2
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.0e-57 227.3 189 56.1
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.3e-57 226.9 181 58.0
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.7e-57 226.5 179 58.1
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.0e-57 225.7 181 59.7
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 6.6e-57 224.6 187 57.8
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 8.7e-57 224.2 188 54.3
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.3e-56 222.2 180 58.3
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 3.3e-56 222.2 183 55.2
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.3e-55 220.3 216 50.0
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.3e-55 220.3 216 50.0
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 8.1e-55 217.6 178 59.0
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.4e-54 216.9 186 54.8
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.4e-54 216.9 179 53.1
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 1.8e-54 216.5 199 52.8
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 3.1e-54 215.7 127 83.5
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.5e-53 213.4 173 59.5
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.0e-53 213.0 198 53.0
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 5.8e-53 211.5 181 53.0
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 5.8e-53 211.5 196 49.5
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.7e-52 209.9 182 52.7
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 2.9e-52 209.1 173 57.8
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 1.1e-51 207.2 182 54.4
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.4e-51 206.8 193 52.3
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.9e-51 206.5 195 48.7
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.9e-51 206.5 195 48.7
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 1.9e-51 206.5 201 47.8
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 2.4e-51 206.1 182 52.2
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 4.2e-51 205.3 182 51.6
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 4.2e-51 205.3 184 50.5
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 4.2e-51 205.3 195 49.2
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 9.3e-51 204.1 179 50.8
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.1e-50 203.0 182 51.1
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 3.5e-50 202.2 183 50.8
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 7.9e-50 201.1 194 47.9
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 1.0e-49 200.7 182 51.6
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.7e-49 199.9 194 49.0
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 2.5e-48 196.1 209 47.8
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.3e-48 194.5 184 51.6
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 1.3e-47 193.7 179 50.8
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 2.1e-47 193.0 182 52.2
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 4.8e-47 191.8 179 50.3
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.5e-45 186.8 180 50.6
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.5e-45 186.8 197 47.2
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.4e-45 185.7 179 47.5
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 4.5e-45 185.3 135 64.4
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 5.8e-45 184.9 179 49.7
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.7e-44 183.3 181 50.3
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 2.2e-44 183.0 172 49.4
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 4.9e-44 181.8 180 44.4
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 4.9e-44 181.8 181 48.1
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 4.9e-44 181.8 181 50.3
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 8.4e-44 181.0 156 52.6
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 8.4e-44 181.0 181 49.7
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.2e-42 177.2 198 46.0
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 3.5e-42 175.6 180 45.6
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 3.9e-41 172.2 183 48.1
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 2.5e-40 169.5 164 49.4
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 2.4e-38 162.9 129 58.1
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 3.0e-33 146.0 191 41.4
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 9.6e-32 141.0 98 61.2
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 3.7e-31 139.0 179 43.0
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 4.8e-31 138.7 191 38.7
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 8.2e-31 137.9 114 53.5
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 3.1e-30 136.0 111 53.2
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 2.9e-28 129.4 104 56.7
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 7.2e-27 124.8 91 63.7
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.5e-26 122.5 153 42.5
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 7.9e-26 121.3 96 55.2
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.8e-25 120.2 101 54.5
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 1.8e-25 120.2 120 48.3
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.3e-25 119.8 193 34.7
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.5e-24 117.1 98 52.0
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 4.3e-24 115.5 102 49.0
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.2e-23 113.2 98 54.1
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 3.8e-20 102.4 72 63.9
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 1.9e-19 100.1 108 43.5
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.2e-19 99.0 101 49.5
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.6e-18 95.9 106 39.6
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 4.6e-18 95.5 68 63.2
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.0e-17 94.4 73 68.5
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 3.9e-17 92.4 84 47.6
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.7e-17 91.7 75 58.7
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 3.7e-15 85.9 104 44.2
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.8e-15 85.5 70 47.1
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 6.9e-14 81.6 41 92.7
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 6.9e-14 81.6 63 55.6
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 1.5e-13 80.5 41 90.2
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.5e-11 73.2 120 30.0
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.8e-09 67.0 69 44.9
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 9.7e-08 61.2 56 53.6
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.2e-07 58.2 62 41.9
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 2.4e-06 56.6 109 35.8
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 9.1e-06 54.7 58 44.8


User provided reference genes

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