Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 3.1e-284 981.1 485 100.0
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 2.5e-270 934.9 486 95.7
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 5.3e-260 900.6 485 92.2
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 6.5e-258 893.6 485 90.9
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 1.4e-255 885.9 485 89.9
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 6.1e-248 860.5 485 87.4
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 1.4e-247 859.4 485 87.4
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 2.0e-246 855.5 485 87.0
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 3.7e-245 851.3 485 86.8
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.8e-244 849.0 486 86.4
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 2.4e-244 848.6 486 86.4
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 1.5e-225 786.2 487 79.5
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 9.2e-188 660.6 487 64.9
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 1.2e-187 660.2 479 66.2
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 2.5e-185 652.5 485 67.0
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 1.6e-184 649.8 485 64.1
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 6.9e-183 644.4 482 66.0
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 1.5e-182 643.3 488 65.8
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 2.6e-182 642.5 485 66.4
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 4.4e-182 641.7 488 64.8
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 7.6e-182 641.0 486 65.2
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 6.4e-181 637.9 488 63.1
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 1.9e-180 636.3 485 62.5
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 1.9e-180 636.3 489 65.2
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 1.2e-179 633.6 490 64.1
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.6e-179 633.3 491 66.0
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 1.6e-179 633.3 490 65.1
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 2.7e-179 632.5 488 65.0
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 2.7e-179 632.5 490 64.5
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 4.6e-179 631.7 482 63.7
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 1.0e-178 630.6 493 63.5
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 2.3e-178 629.4 494 63.6
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 3.0e-178 629.0 492 63.8
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 5.1e-178 628.2 499 63.1
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 1.1e-177 627.1 488 63.5
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 1.6e-176 623.2 488 63.9
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.6e-176 623.2 488 64.1
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.1e-176 622.9 492 64.4
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 3.6e-176 622.1 485 62.3
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 1.1e-175 620.5 485 63.1
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 1.4e-175 620.2 490 64.1
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 6.9e-175 617.8 488 62.1
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 6.9e-175 617.8 485 62.3
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 9.0e-175 617.5 485 61.9
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 2.0e-174 616.3 488 62.3
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 7.6e-174 614.4 483 61.5
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.3e-173 613.6 485 62.3
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 2.9e-173 612.5 485 61.4
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 1.4e-172 610.1 494 61.7
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 4.2e-172 608.6 488 61.7
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 7.1e-172 607.8 466 65.0
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.2e-171 607.1 485 61.0
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 6.0e-171 604.7 484 62.6
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 1.3e-170 603.6 485 61.2
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 3.0e-170 602.4 486 60.9
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 6.7e-170 601.3 491 61.3
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 8.7e-170 600.9 495 62.4
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 5.6e-169 598.2 484 61.4
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 7.4e-169 597.8 484 61.0
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 1.3e-168 597.0 488 61.7
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.3e-168 597.0 485 61.2
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 1.6e-168 596.7 486 60.3
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 1.6e-168 596.7 485 60.8
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 2.8e-168 595.9 491 62.5
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 4.8e-168 595.1 487 60.4
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 2.4e-167 592.8 485 60.8
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 6.9e-167 591.3 486 59.3
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 5.8e-166 588.2 486 60.1
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 1.3e-165 587.0 501 61.1
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 8.4e-165 584.3 487 59.8
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 6.0e-163 578.2 483 59.2
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 2.3e-162 576.2 485 59.8
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 1.1e-161 573.9 483 59.2
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 1.4e-156 557.0 485 57.7
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 2.5e-156 556.2 504 58.3
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 7.1e-156 554.7 485 58.8
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 8.2e-152 541.2 485 57.5
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 1.1e-151 540.8 463 57.7
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 3.1e-151 539.3 448 59.8
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 2.9e-149 532.7 431 60.6
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 1.8e-146 523.5 455 57.8
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 4.1e-143 512.3 275 92.7
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.6e-142 509.6 375 64.5
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 2.2e-136 490.0 385 59.5
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 4.8e-136 488.8 383 64.5
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 1.2e-131 474.2 466 51.5
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 6.1e-131 471.9 275 85.5
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 6.1e-131 471.9 320 70.6
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 6.3e-128 461.8 339 64.9
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.4e-122 444.1 317 65.3
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 1.3e-120 437.6 462 48.1
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 1.4e-114 417.5 493 44.2
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 3.7e-112 409.5 218 91.3
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 3.8e-109 399.4 440 48.2
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 3.4e-97 359.8 445 45.2
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 4.9e-96 355.9 416 44.5
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 9.2e-95 351.7 236 78.0
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.5e-94 349.7 256 66.0
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 1.3e-93 347.8 362 50.6
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 1.1e-90 338.2 388 45.9
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 6.0e-86 322.4 272 60.7
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 2.5e-84 317.0 300 55.0
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 2.1e-83 313.9 398 41.7
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 2.1e-83 313.9 458 41.0
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 5.8e-81 305.8 240 60.0
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 3.7e-80 303.1 320 52.2
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 5.3e-66 256.1 251 54.2
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 9.0e-66 255.4 204 66.2
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 7.1e-55 219.2 180 58.9
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 1.3e-48 198.4 197 52.3
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 9.3e-47 192.2 128 71.9
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 1.2e-46 191.8 128 72.7
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 3.2e-39 167.2 117 70.9
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 3.0e-29 134.0 108 63.9
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 5.9e-25 119.8 100 54.0
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 1.3e-24 118.6 116 51.7
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 7.7e-17 92.8 53 83.0
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 7.7e-17 92.8 53 83.0
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 2.6e-09 67.8 33 93.9
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 5.5e-07 60.1 44 61.4
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 9.4e-07 59.3 68 47.1
MD06G1157100 Malus domestica HOM05D006543 ORTHO05D008308 2.1e-06 58.2 70 42.9


User provided reference genes

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