Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.3e-70 268.9 140 100.0
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 8.3e-65 250.4 138 94.9
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.5e-61 238.8 138 89.9
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 2.3e-59 232.3 143 88.8
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 3.1e-59 231.9 136 86.8
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 5.8e-58 227.6 144 86.8
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.1e-56 223.4 138 81.2
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.9e-56 222.6 138 83.3
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 5.4e-56 221.1 139 83.5
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 2.5e-53 212.2 138 79.0
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-51 206.8 138 77.5
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-51 206.5 137 77.4
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-51 206.5 137 78.1
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.4e-51 206.5 137 78.1
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.4e-51 206.5 137 77.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 6.4e-49 197.6 141 73.0
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-47 193.4 139 74.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.2e-47 193.4 137 74.5
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 2.1e-47 192.6 139 73.4
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 2.7e-47 192.2 138 73.9
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-45 186.8 137 73.0
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-45 186.8 137 73.0
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-45 186.8 137 73.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 3.1e-43 178.7 140 69.3
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 8.4e-41 170.6 139 65.5
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 8.4e-41 170.6 139 65.5
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-40 170.2 138 65.2
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-40 170.2 142 65.5
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.2e-39 166.8 141 65.2
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.6e-39 166.4 131 67.9
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 8.1e-36 154.1 123 68.3
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.2e-34 150.2 139 59.0
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.0e-34 149.4 143 57.3
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 2.0e-34 149.4 155 54.2
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 4.5e-34 148.3 126 58.7
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.8e-34 147.9 148 54.7
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 7.6e-34 147.5 140 56.4
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.3e-33 146.7 143 56.6
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.7e-33 146.4 145 55.9
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.2e-33 146.0 126 59.5
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.2e-33 146.0 120 65.0
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.9e-33 145.6 140 57.9
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 3.8e-33 145.2 145 56.6
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 3.8e-33 145.2 129 61.2
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 4.9e-33 144.8 139 56.8
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 8.4e-33 144.1 139 55.4
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.1e-32 143.7 139 58.3
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.4e-32 143.3 146 54.8
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.4e-32 143.3 138 57.2
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 3.2e-32 142.1 137 59.1
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.2e-32 142.1 136 55.9
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 4.2e-32 141.7 152 55.3
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 4.2e-32 141.7 138 58.7
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.4e-32 141.4 145 54.5
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 9.3e-32 140.6 148 52.7
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.2e-31 140.2 139 54.7
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.6e-31 139.8 123 58.5
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.6e-31 139.8 124 59.7
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.6e-31 139.8 125 58.4
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 2.1e-31 139.4 128 55.5
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.7e-31 139.0 134 57.5
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 3.5e-31 138.7 132 55.3
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 3.5e-31 138.7 140 55.0
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.6e-31 138.3 141 53.2
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 6.0e-31 137.9 121 62.8
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 6.0e-31 137.9 137 56.9
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 6.0e-31 137.9 151 51.0
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.0e-30 137.1 148 52.7
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 1.3e-30 136.7 146 54.8
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.3e-30 136.7 143 55.2
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.9e-30 135.2 133 56.4
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.1e-30 134.8 132 55.3
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 5.1e-30 134.8 136 53.7
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 6.7e-30 134.4 141 53.9
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.1e-29 133.7 134 54.5
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.5e-29 133.3 156 46.2
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.9e-29 132.9 141 53.2
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.6e-29 131.3 142 51.4
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.3e-28 130.2 101 64.4
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.6e-28 129.8 144 52.1
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.6e-28 129.8 138 55.1
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 2.1e-28 129.4 143 51.7
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.8e-28 129.0 140 52.1
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.8e-28 128.3 138 50.0
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.1e-27 127.1 156 44.9
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.1e-27 127.1 133 54.1
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.4e-27 126.7 141 51.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 3.1e-27 125.6 94 66.0
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.1e-27 125.6 162 46.9
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 4.0e-27 125.2 136 50.7
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 5.3e-27 124.8 133 49.6
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 5.3e-27 124.8 146 53.4
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 6.9e-27 124.4 121 50.4
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 6.9e-27 124.4 142 50.7
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.5e-26 123.2 137 50.4
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 2.0e-26 122.9 143 47.6
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 2.0e-26 122.9 89 67.4
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 2.6e-26 122.5 123 56.9
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 2.6e-26 122.5 143 47.6
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 3.4e-26 122.1 146 50.0
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.5e-26 121.7 136 49.3
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 4.5e-26 121.7 138 47.8
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 9.9e-26 120.6 66 93.9
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.3e-25 120.2 93 65.6
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.7e-25 119.8 142 47.2
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.2e-25 119.4 138 54.3
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.2e-25 119.4 134 50.0
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 2.2e-25 119.4 136 51.5
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 2.2e-25 119.4 138 50.0
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 3.8e-25 118.6 89 65.2
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 8.4e-25 117.5 142 46.5
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 8.4e-25 117.5 89 65.2
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.2e-23 113.6 91 60.4
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.2e-23 113.6 94 58.5
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.2e-23 113.6 142 48.6
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.2e-23 113.6 163 44.2
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.2e-23 113.6 118 51.7
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.7e-23 112.5 105 53.3
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 3.5e-23 112.1 101 53.5
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.8e-22 109.8 134 46.3
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.8e-22 109.8 133 46.6
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.3e-22 109.4 83 62.7
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 2.3e-22 109.4 136 47.8
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 3.0e-22 109.0 121 47.1
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 3.9e-22 108.6 148 43.9
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.9e-21 106.3 75 68.0
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.3e-21 105.5 144 44.4
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.3e-21 105.5 144 44.4
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.1e-20 102.8 135 45.2
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 2.1e-20 102.8 135 45.2
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 8.1e-20 100.9 90 55.6
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.1e-19 100.5 136 47.1
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 2.4e-19 99.4 146 39.7
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 3.1e-19 99.0 154 40.9
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 5.8e-18 94.7 118 47.5
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 2.2e-17 92.8 133 44.4
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.5e-17 91.3 142 40.8
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 6.5e-17 91.3 122 42.6
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.4e-16 90.1 121 45.5
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.9e-16 89.7 94 51.1
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.0e-14 84.0 145 39.3
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 1.3e-14 83.6 107 42.1
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 8.7e-14 80.9 91 44.0
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.3e-12 77.0 143 37.8
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.1e-11 73.9 52 71.2
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.4e-11 72.8 92 44.6
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 5.3e-11 71.6 46 73.9
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 2.0e-10 69.7 97 45.4
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 1.0e-09 67.4 95 44.2
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 6.5e-09 64.7 45 68.9
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.1e-08 63.9 90 41.1
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.4e-08 63.5 87 40.2
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.9e-08 63.2 88 44.3
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 3.2e-08 62.4 43 67.4
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 2.1e-07 59.7 69 46.4


User provided reference genes

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