Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 9.7e-189 663.7 429 100.0
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 8.3e-148 527.7 444 81.5
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 5.7e-141 505.0 431 83.5
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 4.7e-135 485.3 434 81.6
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 4.0e-134 482.3 445 77.8
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.6e-130 470.3 438 79.7
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.9e-128 463.4 439 71.1
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 2.5e-128 463.0 437 78.7
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 3.5e-122 442.6 446 72.9
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 6.2e-119 431.8 437 70.7
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.1e-118 431.0 349 78.8
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 8.3e-116 421.4 437 74.1
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 1.4e-115 420.6 440 73.4
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 3.2e-115 419.5 463 73.4
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 3.2e-115 419.5 440 73.2
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 1.6e-114 417.2 440 71.8
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 1.4e-110 404.1 442 69.7
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 2.9e-100 369.8 430 61.9
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 3.8e-100 369.4 408 71.1
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 3.8e-100 369.4 439 64.7
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 4.5e-85 319.3 343 58.0
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 6.5e-84 315.5 362 58.0
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 2.8e-79 300.1 373 53.9
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 6.2e-79 298.9 375 56.8
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.5e-77 294.3 364 52.5
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 2.0e-77 293.9 358 53.6
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.7e-76 290.8 356 52.8
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 5.0e-76 289.3 384 52.3
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 5.0e-76 289.3 390 55.6
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.4e-75 287.7 360 53.1
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.2e-75 286.6 380 51.3
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 4.2e-75 286.2 388 50.5
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.7e-74 283.5 370 53.2
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 6.1e-74 282.3 370 53.5
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 6.1e-74 282.3 375 51.7
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 6.7e-73 278.9 377 52.0
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 8.7e-73 278.5 289 63.3
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.1e-72 278.1 344 51.7
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 7.4e-72 275.4 358 55.6
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.2e-71 273.9 369 52.8
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 2.8e-71 273.5 329 67.8
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 3.7e-71 273.1 380 49.2
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 8.2e-71 271.9 366 55.2
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.8e-70 270.8 365 50.7
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.5e-69 267.7 396 51.8
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 2.0e-69 267.3 392 51.5
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.6e-69 266.9 310 54.8
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 2.6e-69 266.9 364 51.4
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 3.4e-69 266.5 365 49.6
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 5.9e-69 265.8 381 49.3
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 7.7e-69 265.4 393 49.6
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 2.2e-68 263.8 403 48.9
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 3.8e-68 263.1 364 51.1
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.1e-67 261.5 372 54.8
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.4e-67 261.2 389 49.9
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 1.4e-67 261.2 369 52.3
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 3.2e-67 260.0 387 50.6
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 9.4e-67 258.5 371 53.4
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 9.4e-67 258.5 380 51.3
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.2e-66 258.1 373 49.3
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 4.6e-66 256.1 375 50.4
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.4e-65 254.6 420 46.2
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 6.7e-65 252.3 367 49.3
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 8.8e-65 251.9 339 51.0
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 2.5e-64 250.4 371 50.9
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 2.5e-64 250.4 384 49.2
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 3.3e-64 250.0 378 49.5
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 4.3e-64 249.6 361 48.2
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 4.8e-63 246.1 326 51.2
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 1.8e-62 244.2 375 47.2
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 6.9e-62 242.3 369 47.4
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 1.5e-61 241.1 374 47.3
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.0e-61 240.7 312 51.0
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.5e-61 239.6 379 46.7
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 4.5e-61 239.6 350 48.3
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 4.5e-61 239.6 365 49.3
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.9e-61 239.2 377 46.7
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.0e-60 238.4 392 48.0
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.7e-60 237.7 377 47.7
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.7e-60 237.7 372 50.0
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 2.2e-60 237.3 375 51.2
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 2.2e-60 237.3 385 46.2
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 3.8e-60 236.5 378 47.1
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.1e-59 235.0 363 51.5
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.4e-59 234.6 377 46.7
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.9e-59 234.2 373 46.6
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.9e-59 234.2 332 49.4
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 4.2e-59 233.0 313 53.7
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 7.2e-59 232.3 249 57.8
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 7.2e-59 232.3 380 53.2
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 1.2e-58 231.5 332 49.4
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 1.6e-58 231.1 365 46.8
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 2.7e-58 230.3 418 43.1
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 3.6e-58 229.9 347 47.6
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 7.9e-58 228.8 471 50.3
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-57 228.4 384 42.7
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 8.8e-57 225.3 383 45.4
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.1e-56 224.9 275 53.8
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 1.5e-56 224.6 181 63.5
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 5.7e-56 222.6 355 46.2
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 5.7e-56 222.6 349 47.0
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 9.7e-56 221.9 274 57.7
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 1.7e-55 221.1 379 45.1
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 3.7e-55 219.9 377 44.6
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 3.7e-55 219.9 377 44.6
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 8.2e-55 218.8 274 55.1
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 1.1e-54 218.4 369 51.5
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 1.4e-54 218.0 340 48.5
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 2.4e-54 217.2 395 47.6
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.0e-53 214.2 327 44.3
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 3.5e-53 213.4 362 45.9
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 3.5e-53 213.4 270 55.2
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.7e-52 211.1 269 52.0
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 1.7e-52 211.1 420 44.8
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 2.2e-52 210.7 342 46.5
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.5e-52 209.1 381 44.6
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 6.5e-52 209.1 381 44.6
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 8.5e-52 208.8 169 65.7
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 5.5e-51 206.1 315 48.6
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 7.2e-51 205.7 395 44.1
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.2e-50 204.9 365 45.8
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.1e-50 204.1 354 43.8
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 2.7e-50 203.8 338 46.2
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 3.6e-50 203.4 213 56.8
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.6e-50 203.4 482 47.1
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 8.0e-50 202.2 119 79.0
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-49 201.8 320 45.6
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.0e-49 201.8 293 45.7
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.4e-49 201.4 474 47.3
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.4e-49 201.4 260 50.4
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 2.3e-49 200.7 481 47.2
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 8.8e-49 198.7 295 44.4
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 4.4e-48 196.4 472 48.1
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 4.4e-48 196.4 319 44.8
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.7e-48 196.1 331 47.1
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.7e-47 194.5 350 46.6
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 3.7e-47 193.4 178 61.2
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.4e-46 191.4 341 44.0
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 4.1e-46 189.9 378 42.1
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 7.0e-46 189.1 219 63.5
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 5.9e-45 186.0 295 46.8
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 2.2e-44 184.1 119 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 9.4e-43 178.7 211 53.1
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 1.6e-37 161.4 255 49.4
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 3.5e-37 160.2 276 47.5
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 4.5e-37 159.8 152 65.1
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 2.2e-36 157.5 144 65.3
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 3.8e-36 156.8 165 58.2
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 5.9e-29 132.9 251 44.2
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 9.8e-24 115.5 73 71.2
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 7.3e-19 99.4 121 40.5
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 3.4e-08 63.9 91 44.0
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 5.8e-08 63.2 105 39.0
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 9.8e-08 62.4 91 41.8
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 1.3e-07 62.0 95 41.1
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 2.2e-07 61.2 44 65.9
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 2.9e-07 60.8 91 41.8
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 3.7e-07 60.5 91 41.8
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 4.9e-07 60.1 41 63.4
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 8.3e-07 59.3 102 38.2
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 1.1e-06 58.9 100 37.0
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 1.9e-06 58.2 91 39.6
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 2.4e-06 57.8 91 39.6
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 4.1e-06 57.0 92 40.2
MD13G1008100 Malus domestica HOM05D005264 ORTHO05D005428 5.4e-06 56.6 43 55.8
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 5.4e-06 56.6 33 69.7
Sed0010268 Sechium edule HOM05D005264 ORTHO05D005428 7.1e-06 56.2 40 67.5
AL1G57940 Arabidopsis lyrata HOM05D005264 ORTHO05D005428 9.2e-06 55.8 45 62.2
Carub.0001s3940 Capsella rubella HOM05D005264 ORTHO05D005428 9.2e-06 55.8 45 62.2
FvH4_4g36691 Fragaria vesca HOM05D005264 ORTHO05D005428 9.2e-06 55.8 37 62.2
RcHm_v2.0_Chr4g0446411 Rosa chinensis HOM05D005264 ORTHO05D005428 9.2e-06 55.8 37 62.2


User provided reference genes

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