Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 3.0e-116 421.8 202 100.0
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.0e-68 263.8 201 68.2
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 2.9e-58 229.2 202 58.9
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 7.8e-48 194.5 172 57.6
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 5.2e-44 181.8 173 54.3
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 8.9e-44 181.0 170 54.1
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 7.6e-43 177.9 171 53.8
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.7e-42 176.8 175 52.0
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.7e-42 176.8 175 52.0
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.7e-42 176.8 173 53.2
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 2.2e-42 176.4 172 52.9
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 2.4e-41 172.9 172 51.2
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.4e-41 172.9 175 50.3
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 2.4e-41 172.9 172 51.2
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.4e-41 172.9 175 50.3
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 4.2e-41 172.2 169 52.7
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 7.1e-41 171.4 164 53.7
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 2.1e-40 169.9 175 49.7
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 2.7e-40 169.5 172 50.0
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 3.5e-40 169.1 172 50.6
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.5e-38 163.7 171 50.3
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.8e-36 156.8 220 42.3
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 2.0e-35 153.3 173 46.2
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.6e-35 152.9 163 46.6
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 2.4e-33 146.4 176 45.5
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 3.2e-33 146.0 160 45.6
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.1e-33 144.8 162 43.2
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.3e-33 144.4 162 43.2
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.7e-32 142.9 162 43.2
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 6.0e-32 141.7 161 46.0
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.0e-31 141.0 173 40.5
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 3.0e-31 139.4 171 41.5
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 3.9e-31 139.0 166 43.4
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 5.1e-31 138.7 175 41.7
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 5.1e-31 138.7 168 42.3
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 5.1e-31 138.7 152 45.4
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 6.6e-31 138.3 148 46.6
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 6.6e-31 138.3 178 39.3
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 8.7e-31 137.9 168 41.7
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.1e-30 137.5 161 42.9
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 1.9e-30 136.7 175 41.1
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 2.5e-30 136.3 171 41.5
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 4.3e-30 135.6 164 42.7
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 7.3e-30 134.8 169 42.6
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 7.3e-30 134.8 168 41.7
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 9.6e-30 134.4 173 39.9
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 9.6e-30 134.4 145 49.0
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 9.6e-30 134.4 148 44.6
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 9.6e-30 134.4 163 41.7
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 9.6e-30 134.4 165 41.8
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.3e-29 134.0 166 42.8
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.3e-29 134.0 167 42.5
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.6e-29 133.7 175 40.6
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.8e-29 132.9 165 41.2
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.6e-29 132.5 167 41.9
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 3.6e-29 132.5 166 42.2
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 6.2e-29 131.7 162 42.0
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 6.2e-29 131.7 167 40.7
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 6.2e-29 131.7 167 40.7
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 8.1e-29 131.3 162 42.0
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 8.1e-29 131.3 166 41.0
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 8.1e-29 131.3 171 41.5
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.8e-28 130.2 171 39.8
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.8e-28 130.2 165 43.0
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.4e-28 129.8 154 42.9
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 2.4e-28 129.8 164 41.5
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.4e-28 129.8 170 42.4
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 2.4e-28 129.8 168 41.7
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 2.4e-28 129.8 167 40.7
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 2.4e-28 129.8 167 40.7
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.1e-28 129.4 158 41.1
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.1e-28 129.4 158 41.1
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 3.1e-28 129.4 174 42.5
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 3.1e-28 129.4 168 42.9
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 4.0e-28 129.0 165 40.6
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 5.3e-28 128.6 153 43.1
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 6.9e-28 128.3 164 43.3
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 6.9e-28 128.3 148 42.6
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 6.9e-28 128.3 171 40.4
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 9.0e-28 127.9 166 40.4
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 1.2e-27 127.5 162 42.6
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 1.5e-27 127.1 170 41.8
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.5e-27 127.1 173 40.5
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.6e-27 126.3 172 39.5
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 2.6e-27 126.3 170 40.0
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 2.6e-27 126.3 174 39.1
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 3.4e-27 125.9 166 42.2
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.7e-26 123.6 172 40.1
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.7e-26 123.6 201 35.3
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.7e-26 123.6 170 40.0
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 3.8e-26 122.5 168 39.9
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 4.9e-26 122.1 162 40.7
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 6.4e-26 121.7 179 34.6
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 6.4e-26 121.7 158 42.4
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 8.4e-26 121.3 172 37.8
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.9e-25 120.2 171 38.0
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 3.2e-25 119.4 187 33.7
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 3.2e-25 119.4 166 41.6
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 3.2e-25 119.4 154 37.7
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.4e-25 118.6 152 41.4
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 3.5e-24 115.9 173 37.6
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 7.9e-24 114.8 152 40.8
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 2.3e-23 113.2 173 37.0
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 3.0e-23 112.8 149 42.3
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.1e-23 112.1 143 41.3
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 8.7e-23 111.3 147 40.8
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.9e-22 110.2 186 34.9
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 4.3e-22 109.0 147 39.5
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 4.3e-22 109.0 145 38.6
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.6e-22 107.8 156 40.4
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 9.6e-22 107.8 148 39.9
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.6e-22 107.8 144 38.2
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.6e-22 107.8 144 38.2
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.7e-21 105.9 172 37.2
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.8e-20 103.6 185 31.9
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 1.2e-19 100.9 143 38.5
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 1.2e-19 100.9 102 48.0
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 2.0e-19 100.1 190 32.6
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 2.6e-19 99.8 144 39.6
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 3.4e-19 99.4 134 41.0
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 4.9e-18 95.5 131 36.6
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.1e-17 94.4 192 32.8
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 5.5e-17 92.0 107 45.8
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 7.1e-17 91.7 193 28.0
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 1.2e-16 90.9 114 43.0
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.0e-16 88.6 155 35.5
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 6.0e-16 88.6 144 36.8
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 7.9e-16 88.2 189 28.6
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.0e-15 86.3 151 35.8
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.9e-15 85.9 205 29.3
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 6.7e-15 85.1 94 44.7
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.6e-14 81.3 118 34.7
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.6e-11 71.6 88 43.2
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 4.2e-09 65.9 131 35.1
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 9.3e-09 64.7 89 37.1
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.5e-08 62.8 134 29.9


User provided reference genes

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