Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G20460 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 2.5e-84 315.5 163 100.0
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.4e-23 113.6 192 46.9
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 3.9e-21 105.5 192 43.8
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 5.0e-21 105.1 193 43.5
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 5.0e-21 105.1 191 46.1
AT1G79280 Arabidopsis thaliana HOM05D003499 ORTHO05D004754 6.6e-21 104.8 192 43.8
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 6.6e-21 104.8 193 43.0
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 8.6e-21 104.4 193 44.0
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 1.1e-20 104.0 193 43.0
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 1.5e-20 103.6 193 43.0
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 9.5e-20 100.9 160 47.5
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 4.4e-17 92.0 110 58.2
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 4.4e-17 92.0 110 58.2
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 4.4e-17 92.0 110 58.2
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 4.4e-17 92.0 110 58.2
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 1.7e-16 90.1 105 59.0
vmacro21306 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 2.9e-16 89.4 81 64.2
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 2.4e-15 86.3 121 47.9
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 2.4e-15 86.3 122 46.7
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 4.1e-15 85.5 115 49.6
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 7.0e-15 84.7 114 50.9
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 1.2e-14 84.0 115 48.7
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 1.6e-14 83.6 122 44.3
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 1.6e-14 83.6 122 44.3
Hma1.2p1_0151F.1_g066930 Hydrangea macrophylla HOM05D003499 ORTHO05D004754 2.0e-14 83.2 169 37.3
Haze_18466 Corylus avellana HOM05D003499 ORTHO05D004754 3.5e-14 82.4 114 49.1
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 4.6e-14 82.0 115 46.1
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 4.6e-14 82.0 121 44.6
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 4.6e-14 82.0 115 47.8
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 6.0e-14 81.6 120 47.5
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 6.0e-14 81.6 114 48.2
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 7.8e-14 81.3 114 50.0
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 7.8e-14 81.3 114 50.0
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 7.8e-14 81.3 114 50.0
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 7.8e-14 81.3 114 50.0
Cfa017771 Carpinus fangiana HOM05D003499 ORTHO05D004754 1.3e-13 80.5 114 48.2
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 1.3e-13 80.5 115 47.8
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 1.7e-13 80.1 114 49.1
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 1.7e-13 80.1 120 46.7
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 3.0e-13 79.3 115 45.2
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 3.0e-13 79.3 120 46.7
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 3.9e-13 79.0 114 49.1
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 3.9e-13 79.0 122 44.3
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 3.9e-13 79.0 122 44.3
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 3.9e-13 79.0 122 44.3
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 3.9e-13 79.0 158 38.6
MD10G1218800 Malus domestica HOM05D003499 ORTHO05D004754 3.9e-13 79.0 114 47.4
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 3.9e-13 79.0 114 45.6
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 6.6e-13 78.2 120 46.7
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 8.6e-13 77.8 114 45.6
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 8.6e-13 77.8 70 64.3
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 8.6e-13 77.8 114 46.5
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 1.1e-12 77.4 115 45.2
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 1.1e-12 77.4 115 45.2
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 1.1e-12 77.4 114 47.4
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 1.5e-12 77.0 114 45.6
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 1.5e-12 77.0 115 45.2
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 1.5e-12 77.0 114 45.6
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 1.5e-12 77.0 115 47.8
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 1.9e-12 76.6 108 47.2
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 1.9e-12 76.6 115 47.8
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 1.9e-12 76.6 115 43.5
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 2.5e-12 76.3 121 45.5
AL2G39750 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 3.3e-12 75.9 112 49.1
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 3.3e-12 75.9 115 47.0
TAR626G0290 Trochodendron aralioides HOM05D003499 ORTHO05D004754 3.3e-12 75.9 170 34.1
MELO3C012583.2 Cucumis melo HOM05D003499 ORTHO05D004754 5.6e-12 75.1 115 47.0
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 7.3e-12 74.7 121 44.6
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 7.3e-12 74.7 121 44.6
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 9.5e-12 74.3 114 45.6
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 9.5e-12 74.3 122 42.6
Oeu025989.1 Olea europaea HOM05D003499 ORTHO05D004754 9.5e-12 74.3 169 34.9
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 9.5e-12 74.3 169 34.9
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 1.2e-11 73.9 120 44.2
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 1.6e-11 73.6 115 46.1
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 1.6e-11 73.6 157 36.9
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 2.1e-11 73.2 114 44.7
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 2.8e-11 72.8 115 42.6
Nitab4.5_0005627g0040 Nicotiana tabacum HOM05D003499 ORTHO05D004754 2.8e-11 72.8 155 38.1
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 4.7e-11 72.0 114 43.0
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 6.2e-11 71.6 119 43.7
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 8.0e-11 71.2 155 37.4
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 8.0e-11 71.2 114 43.0
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 8.0e-11 71.2 119 43.7
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 1.1e-10 70.9 114 42.1
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 1.4e-10 70.5 114 43.9
MBI02_g17882_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.4e-10 70.5 121 40.5
DCAR_013704 Daucus carota HOM05D003499 ORTHO05D004754 1.8e-10 70.1 124 37.9
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 2.3e-10 69.7 122 41.8
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 6.8e-10 68.2 122 38.5
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 6.8e-10 68.2 115 44.3
Peaxi162Scf00579g00316 Petunia axillaris HOM05D003499 ORTHO05D004754 6.8e-10 68.2 114 41.2
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 1.2e-09 67.4 114 41.2
HanXRQChr08g0213121 Helianthus annuus HOM05D003499 ORTHO05D004754 1.2e-09 67.4 122 38.5
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 7.5e-09 64.7 115 42.6
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 9.8e-09 64.3 114 37.7
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 9.8e-09 64.3 114 41.2
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 1.4e-07 60.5 114 35.1
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 1.9e-07 60.1 67 62.7
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 1.9e-07 60.1 67 62.7
Os02g0741500 Oryza sativa ssp. japonica HOM05D003499 ORTHO05D004754 1.9e-07 60.1 147 30.6
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 1.2e-06 57.4 142 34.5
Zm00001eb194730 Zea mays HOM05D003499 ORTHO05D004754 1.2e-06 57.4 169 29.6
SEGI_41216 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 1.6e-06 57.0 160 31.9
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 2.7e-06 56.2 108 37.0
HPP92_017349 Vanilla planifolia HOM05D003499 ORTHO05D004754 2.7e-06 56.2 114 35.1


User provided reference genes

Program Settings